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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
Anticodon table
[OIDY] human gut metagenome; feces
Number of tRNA genes
T
C
A
G
T
phe
AAA
0
Ser
AGA
0
Tyr
ATA
0
Cys
ACA
0
T
GAA
16
GGA
9
GTA
15
GCA
12
C
Leu
TAA
10
TGA
13
ochre
TTA
0
opal Sec
TCA
3
A
CAA
14
CGA
9
amber
CTA
0
Trp
CCA
12
G
C
Leu
AAG
3
Pro
AGG
0
His
ATG
0
Arg
ACG
7
T
GAG
3
GGG
7
GTG
7
GCG
0
C
TAG
13
TGG
11
Gln
TTG
10
TCG
0
A
CAG
9
CGG
11
CTG
13
CCG
6
G
A
Ile
AAT
0
Thr
AGT
0
Asn
ATT
0
Ser
ACT
0
T
GAT
12
GGT
9
GTT
12
GCT
13
C
TAT
1
TGT
15
Lys
TTT
8
Arg
TCT
9
A
Met
CAT
26
CGT
9
CTT
11
CCT
15
G
G
Val
AAC
0
Ala
AGC
0
Asp
ATC
0
Gly
ACC
0
T
GAC
7
GGC
6
GTC
10
GCC
7
C
TAC
9
TGC
11
Glu
TTC
7
TCC
8
A
CAC
6
CGC
3
CTC
11
CCC
7
G
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