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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[CWHJ] human gut metagenome; ENVO:feces
HIT:
60 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170540755
CWHJ01000006
[CWHJ] human gut metagenome; ENVO:feces
76
1
-
Val
TAC
[ENA]
¢þ
>WENV170540800
CWHJ01000158
[CWHJ] human gut metagenome; ENVO:feces
109
34
-
Lys
TTT
[ENA]
¢þ
>WENV170540754
CWHJ01000006
[CWHJ] human gut metagenome; ENVO:feces
198
123
-
Val
TAC
[ENA]
¢þ
>WENV170540801
CWHJ01000159
[CWHJ] human gut metagenome; ENVO:feces
210
135
-
Lys
TTT
[ENA]
¢þ
>WENV170540773
CWHJ01000100
[CWHJ] human gut metagenome; ENVO:feces
265
189
-
Arg
ACG
[ENA]
¢þ
>WENV170540753
CWHJ01000006
[CWHJ] human gut metagenome; ENVO:feces
318
243
-
Val
TAC
[ENA]
¢þ
>WENV170540799
CWHJ01000158
[CWHJ] human gut metagenome; ENVO:feces
331
256
-
Lys
TTT
[ENA]
¢þ
>WENV170540772
CWHJ01000100
[CWHJ] human gut metagenome; ENVO:feces
406
330
-
Arg
ACG
[ENA]
¢þ
>WENV170540798
CWHJ01000158
[CWHJ] human gut metagenome; ENVO:feces
411
336
-
Val
TAC
[ENA]
¢þ
>WENV170540771
CWHJ01000100
[CWHJ] human gut metagenome; ENVO:feces
502
410
-
Ser
GCT
[ENA]
¢þ
>WENV170540805
CWHJ01000217
[CWHJ] human gut metagenome; ENVO:feces
1378
1303
-
Asn
GTT
[ENA]
¢þ
>WENV170540752
CWHJ01000006
[CWHJ] human gut metagenome; ENVO:feces
3018
3093
+
Ala
GGC
[ENA]
¢þ
>WENV170540803
CWHJ01000217
[CWHJ] human gut metagenome; ENVO:feces
3127
3202
+
Asn
GTT
[ENA]
¢þ
>WENV170540758
CWHJ01000021
[CWHJ] human gut metagenome; ENVO:feces
3657
3732
+
Thr
TGT
[ENA]
¢þ
>WENV170540759
CWHJ01000021
[CWHJ] human gut metagenome; ENVO:feces
3741
3825
+
Tyr
GTA
[ENA]
¢þ
>WENV170540760
CWHJ01000021
[CWHJ] human gut metagenome; ENVO:feces
3942
4016
+
Gly
TCC
[ENA]
¢þ
>WENV170540790
CWHJ01000137
[CWHJ] human gut metagenome; ENVO:feces
4874
4949
+
Gly
GCC
[ENA]
¢þ
>WENV170540791
CWHJ01000137
[CWHJ] human gut metagenome; ENVO:feces
5004
5077
+
Cys
GCA
[ENA]
¢þ
>WENV170540792
CWHJ01000137
[CWHJ] human gut metagenome; ENVO:feces
5090
5176
+
Leu
TAA
[ENA]
¢þ
>WENV170540804
CWHJ01000217
[CWHJ] human gut metagenome; ENVO:feces
5535
5610
+
Asn
GTT
[ENA]
¢þ
>WENV170540769
CWHJ01000097
[CWHJ] human gut metagenome; ENVO:feces
7610
7686
+
Pro
CGG
[ENA]
¢þ
>WENV170540809
CWHJ01000248
[CWHJ] human gut metagenome; ENVO:feces
8468
8381
-
Ser
GGA
[ENA]
¢þ
>WENV170540811
CWHJ01000251
[CWHJ] human gut metagenome; ENVO:feces
9355
9280
-
Asn
GTT
[ENA]
¢þ
>WENV170540810
CWHJ01000251
[CWHJ] human gut metagenome; ENVO:feces
10347
10436
+
Ser
CGA
[ENA]
¢þ
>WENV170540783
CWHJ01000129
[CWHJ] human gut metagenome; ENVO:feces
13225
13301
+
Arg
TCT
[ENA]
¢þ
>WENV170540770
CWHJ01000099
[CWHJ] human gut metagenome; ENVO:feces
14390
14315
-
Met
CAT
[ENA]
¢þ
>WENV170540763
CWHJ01000038
[CWHJ] human gut metagenome; ENVO:feces
14838
14762
-
Asp
GTC
[ENA]
¢þ
>WENV170540802
CWHJ01000200
[CWHJ] human gut metagenome; ENVO:feces
15379
15463
+
Leu
CAA
[ENA]
¢þ
>WENV170540757
CWHJ01000018
[CWHJ] human gut metagenome; ENVO:feces
16769
16685
-
Tyr
GTA
[ENA]
¢þ
>WENV170540756
CWHJ01000018
[CWHJ] human gut metagenome; ENVO:feces
16888
16804
-
Tyr
GTA
[ENA]
¢þ
>WENV170540766
CWHJ01000068
[CWHJ] human gut metagenome; ENVO:feces
28938
28864
-
Gly
TCC
[ENA]
¢þ
>WENV170540789
CWHJ01000130
[CWHJ] human gut metagenome; ENVO:feces
32755
32849
+
SeC(p)
TCA
[ENA]
¢þ
>WENV170540765
CWHJ01000068
[CWHJ] human gut metagenome; ENVO:feces
33156
33080
-
Arg
TCG
[ENA]
¢þ
>WENV170540782
CWHJ01000125
[CWHJ] human gut metagenome; ENVO:feces
35534
35459
-
Gly
GCC
[ENA]
¢þ
>WENV170540781
CWHJ01000125
[CWHJ] human gut metagenome; ENVO:feces
35645
35570
-
Gly
GCC
[ENA]
¢þ
>WENV170540762
CWHJ01000022
[CWHJ] human gut metagenome; ENVO:feces
41609
41533
-
Met
CAT
[ENA]
¢þ
>WENV170540774
CWHJ01000112
[CWHJ] human gut metagenome; ENVO:feces
42743
42818
+
Thr
CGT
[ENA]
¢þ
>WENV170540794
CWHJ01000151
[CWHJ] human gut metagenome; ENVO:feces
43204
43280
+
Met
CAT
[ENA]
¢þ
>WENV170540761
CWHJ01000022
[CWHJ] human gut metagenome; ENVO:feces
45478
45392
-
Leu
GAG
[ENA]
¢þ
>WENV170540796
CWHJ01000154
[CWHJ] human gut metagenome; ENVO:feces
45976
46051
+
Phe
GAA
[ENA]
¢þ
>WENV170540779
CWHJ01000119
[CWHJ] human gut metagenome; ENVO:feces
52366
52290
-
Pro
TGG
[ENA]
¢þ
>WENV170540778
CWHJ01000119
[CWHJ] human gut metagenome; ENVO:feces
52495
52409
-
Leu
CAG
[ENA]
¢þ
>WENV170540777
CWHJ01000119
[CWHJ] human gut metagenome; ENVO:feces
52591
52516
-
His
GTG
[ENA]
¢þ
>WENV170540776
CWHJ01000119
[CWHJ] human gut metagenome; ENVO:feces
52726
52650
-
Arg
CCG
[ENA]
¢þ
>WENV170540764
CWHJ01000039
[CWHJ] human gut metagenome; ENVO:feces
54928
55015
+
Ser
TGA
[ENA]
¢þ
>WENV170540807
CWHJ01000243
[CWHJ] human gut metagenome; ENVO:feces
56830
56906
+
Pro
GGG
[ENA]
¢þ
>WENV170540806
CWHJ01000224
[CWHJ] human gut metagenome; ENVO:feces
59123
59048
-
Met
CAT
[ENA]
¢þ
>WENV170540780
CWHJ01000125
[CWHJ] human gut metagenome; ENVO:feces
64820
64895
+
Phe
GAA
[ENA]
¢þ
>WENV170540768
CWHJ01000083
[CWHJ] human gut metagenome; ENVO:feces
72878
72792
-
Leu
CAG
[ENA]
¢þ
>WENV170540767
CWHJ01000083
[CWHJ] human gut metagenome; ENVO:feces
72999
72913
-
Leu
CAG
[ENA]
¢þ
>WENV170540793
CWHJ01000141
[CWHJ] human gut metagenome; ENVO:feces
74949
74873
-
Val
GAC
[ENA]
¢þ
>WENV170540775
CWHJ01000119
[CWHJ] human gut metagenome; ENVO:feces
88145
88070
-
Trp
CCA
[ENA]
¢þ
>WENV170540795
CWHJ01000151
[CWHJ] human gut metagenome; ENVO:feces
101612
101539
-
Gly
CCC
[ENA]
¢þ
>WENV170540808
CWHJ01000244
[CWHJ] human gut metagenome; ENVO:feces
114541
114615
+
Arg
CCT
[ENA]
¢þ
>WENV170540788
CWHJ01000129
[CWHJ] human gut metagenome; ENVO:feces
123319
123245
-
Gln
CTG
[ENA]
¢þ
>WENV170540787
CWHJ01000129
[CWHJ] human gut metagenome; ENVO:feces
123431
123357
-
Gln
CTG
[ENA]
¢þ
>WENV170540786
CWHJ01000129
[CWHJ] human gut metagenome; ENVO:feces
123627
123543
-
Leu
TAG
[ENA]
¢þ
>WENV170540785
CWHJ01000129
[CWHJ] human gut metagenome; ENVO:feces
123712
123636
-
Met
CAT
[ENA]
¢þ
>WENV170540784
CWHJ01000129
[CWHJ] human gut metagenome; ENVO:feces
123802
123728
-
Gln
TTG
[ENA]
¢þ
>WENV170540797
CWHJ01000157
[CWHJ] human gut metagenome; ENVO:feces
141918
141842
-
Arg
TCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK