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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[FSYV] metagenome; soil
HIT:
57 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180018304
FSYV01000472
[FSYV] metagenome; soil
16
92
+
Arg
ACG
[ENA]
¢þ
>WENV180018322
FSYV01000677
[FSYV] metagenome; soil
20
95
+
Ala
GGC
[ENA]
¢þ
>WENV180018321
FSYV01000660
[FSYV] metagenome; soil
79
3
-
Val
GAC
[ENA]
¢þ
>WENV180018277
FSYV01000146
[FSYV] metagenome; soil
83
8
-
Lys
CTT
[ENA]
¢þ
>WENV180018280
FSYV01000169
[FSYV] metagenome; soil
95
2
-
Ser
GCT
[ENA]
¢þ
>WENV180018284
FSYV01000215
[FSYV] metagenome; soil
95
170
+
Gly
GCC
[ENA]
¢þ
>WENV180018293
FSYV01000348
[FSYV] metagenome; soil
172
97
-
Lys
CTT
[ENA]
¢þ
>WENV180018323
FSYV01000677
[FSYV] metagenome; soil
187
262
+
Glu
TTC
[ENA]
¢þ
>WENV180018325
FSYV01000681
[FSYV] metagenome; soil
218
143
-
Gly
GCC
[ENA]
¢þ
>WENV180018285
FSYV01000215
[FSYV] metagenome; soil
277
350
+
Cys
GCA
[ENA]
¢þ
>WENV180018269
FSYV01000051
[FSYV] metagenome; soil
341
416
+
Trp
CCA
[ENA]
¢þ
>WENV180018324
FSYV01000681
[FSYV] metagenome; soil
393
318
-
Gly
GCC
[ENA]
¢þ
>WENV180018298
FSYV01000414
[FSYV] metagenome; soil
489
413
-
Asp
GTC
[ENA]
¢þ
>WENV180018286
FSYV01000231
[FSYV] metagenome; soil
510
435
-
Lys
TTT
[ENA]
¢þ
>WENV180018283
FSYV01000202
[FSYV] metagenome; soil
540
464
-
Arg
TCT
[ENA]
¢þ
>WENV180018297
FSYV01000414
[FSYV] metagenome; soil
611
536
-
Val
TAC
[ENA]
¢þ
>WENV180018291
FSYV01000291
[FSYV] metagenome; soil
852
941
+
Ser
TGA
[ENA]
¢þ
>WENV180018287
FSYV01000242
[FSYV] metagenome; soil
2169
2243
+
Arg
CCT
[ENA]
¢þ
>WENV180018292
FSYV01000346
[FSYV] metagenome; soil
2416
2505
+
Ser
CGA
[ENA]
¢þ
>WENV180018272
FSYV01000105
[FSYV] metagenome; soil
3052
2977
-
His
GTG
[ENA]
¢þ
>WENV180018295
FSYV01000382
[FSYV] metagenome; soil
3515
3587
+
Ala
GGC
[ENA]
¢þ
>WENV180018320
FSYV01000648
[FSYV] metagenome; soil
4610
4686
+
Pro
TGG
[ENA]
¢þ
>WENV180018273
FSYV01000106
[FSYV] metagenome; soil
4860
4935
+
Phe
GAA
[ENA]
¢þ
>WENV180018318
FSYV01000567
[FSYV] metagenome; soil
4903
4827
-
Asp
GTC
[ENA]
¢þ
>WENV180018294
FSYV01000349
[FSYV] metagenome; soil
6622
6548
-
Val
CAC
[ENA]
¢þ
>WENV180018276
FSYV01000132
[FSYV] metagenome; soil
8626
8721
+
SeC
TCA
[ENA]
¢þ
>WENV180018314
FSYV01000534
[FSYV] metagenome; soil
10674
10598
-
Gln
TTG
[ENA]
¢þ
>WENV180018317
FSYV01000567
[FSYV] metagenome; soil
12034
11948
-
Leu
TAG
[ENA]
¢þ
>WENV180018306
FSYV01000481
[FSYV] metagenome; soil
12438
12514
+
Pro
TGG
[ENA]
¢þ
>WENV180018309
FSYV01000497
[FSYV] metagenome; soil
12953
12877
-
fMet
CAT
[ENA]
¢þ
>WENV180018274
FSYV01000111
[FSYV] metagenome; soil
13678
13754
+
fMet
CAT
[ENA]
¢þ
>WENV180018303
FSYV01000468
[FSYV] metagenome; soil
16373
16298
-
Ala
CGC
[ENA]
¢þ
>WENV180018275
FSYV01000116
[FSYV] metagenome; soil
16634
16710
+
Arg
ACG
[ENA]
¢þ
>WENV180018319
FSYV01000617
[FSYV] metagenome; soil
16945
17020
+
Lys
TTT
[ENA]
¢þ
>WENV180018305
FSYV01000478
[FSYV] metagenome; soil
17068
16992
-
Pro
CGG
[ENA]
¢þ
>WENV180018278
FSYV01000169
[FSYV] metagenome; soil
17407
17491
+
Leu
CAG
[ENA]
¢þ
>WENV180018296
FSYV01000390
[FSYV] metagenome; soil
20097
20021
-
Gln
TTG
[ENA]
¢þ
>WENV180018299
FSYV01000458
[FSYV] metagenome; soil
21310
21235
-
Lys
CTT
[ENA]
¢þ
>WENV180018316
FSYV01000546
[FSYV] metagenome; soil
24816
24900
+
Leu
GAG
[ENA]
¢þ
>WENV180018271
FSYV01000097
[FSYV] metagenome; soil
27860
27784
-
fMet
CAT
[ENA]
¢þ
>WENV180018270
FSYV01000087
[FSYV] metagenome; soil
28551
28635
+
Leu
CAA
[ENA]
¢þ
>WENV180018301
FSYV01000463
[FSYV] metagenome; soil
28740
28665
-
Glu
TTC
[ENA]
¢þ
>WENV180018300
FSYV01000463
[FSYV] metagenome; soil
28873
28798
-
Ala
GGC
[ENA]
¢þ
>WENV180018313
FSYV01000526
[FSYV] metagenome; soil
31076
31152
+
Met
CAT
[ENA]
¢þ
>WENV180018310
FSYV01000510
[FSYV] metagenome; soil
33210
33295
+
Tyr
GTA
[ENA]
¢þ
>WENV180018311
FSYV01000510
[FSYV] metagenome; soil
33375
33448
+
Gly
TCC
[ENA]
¢þ
>WENV180018312
FSYV01000510
[FSYV] metagenome; soil
33524
33598
+
Thr
GGT
[ENA]
¢þ
>WENV180018308
FSYV01000486
[FSYV] metagenome; soil
33886
33959
+
Gly
CCC
[ENA]
¢þ
>WENV180018315
FSYV01000544
[FSYV] metagenome; soil
36446
36371
-
Thr
TGT
[ENA]
¢þ
>WENV180018307
FSYV01000481
[FSYV] metagenome; soil
67443
67517
+
Val
CAC
[ENA]
¢þ
>WENV180018282
FSYV01000198
[FSYV] metagenome; soil
69295
69220
-
Thr
CGT
[ENA]
¢þ
>WENV180018281
FSYV01000192
[FSYV] metagenome; soil
72983
72907
-
Arg
TCT
[ENA]
¢þ
>WENV180018290
FSYV01000248
[FSYV] metagenome; soil
81343
81267
-
Asp
GTC
[ENA]
¢þ
>WENV180018289
FSYV01000248
[FSYV] metagenome; soil
81453
81378
-
Val
TAC
[ENA]
¢þ
>WENV180018302
FSYV01000464
[FSYV] metagenome; soil
81655
81731
+
Arg
ACG
[ENA]
¢þ
>WENV180018279
FSYV01000169
[FSYV] metagenome; soil
82505
82429
-
Pro
GGG
[ENA]
¢þ
>WENV180018288
FSYV01000248
[FSYV] metagenome; soil
95353
95428
+
Arg
CCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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