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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[FSYX] metagenome; soil
HIT:
37 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180018345
FSYX01000131
[FSYX] metagenome; soil
22
99
+
Pro
TGG
[ENA]
¢þ
>WENV180018340
FSYX01000057
[FSYX] metagenome; soil
78
1
-
Pro
TGG
[ENA]
¢þ
>WENV180018359
FSYX01000347
[FSYX] metagenome; soil
139
63
-
fMet
CAT
[ENA]
¢þ
>WENV180018339
FSYX01000057
[FSYX] metagenome; soil
257
329
+
Gly
TCC
[ENA]
¢þ
>WENV180018364
FSYX01000422
[FSYX] metagenome; soil
281
208
-
Trp
CCA
[ENA]
¢þ
>WENV180018374
FSYX01000568
[FSYX] metagenome; soil
543
632
+
Ser
CGA
[ENA]
¢þ
>WENV180018353
FSYX01000264
[FSYX] metagenome; soil
594
666
+
Gln
CTG
[ENA]
¢þ
>WENV180018338
FSYX01000013
[FSYX] metagenome; soil
647
722
+
Glu
CTC
[ENA]
¢þ
>WENV180018366
FSYX01000465
[FSYX] metagenome; soil
857
932
+
His
GTG
[ENA]
¢þ
>WENV180018365
FSYX01000448
[FSYX] metagenome; soil
1021
948
-
Arg
CCG
[ENA]
¢þ
>WENV180018350
FSYX01000191
[FSYX] metagenome; soil
1192
1264
+
Gln
TTG
[ENA]
¢þ
>WENV180018360
FSYX01000348
[FSYX] metagenome; soil
1447
1362
-
Ser
TGA
[ENA]
¢þ
>WENV180018373
FSYX01000532
[FSYX] metagenome; soil
1616
1545
-
Gly
TCC
[ENA]
¢þ
>WENV180018362
FSYX01000386
[FSYX] metagenome; soil
1959
1874
-
Ser
GGA
[ENA]
¢þ
>WENV180018344
FSYX01000112
[FSYX] metagenome; soil
2028
2115
+
Ser
GGA
[ENA]
¢þ
>WENV180018368
FSYX01000470
[FSYX] metagenome; soil
2033
1959
-
Pro
GGG
[ENA]
¢þ
>WENV180018369
FSYX01000497
[FSYX] metagenome; soil
2076
2150
+
Thr
CGT
[ENA]
¢þ
>WENV180018371
FSYX01000507
[FSYX] metagenome; soil
2284
2210
-
Ile2
CAT
[ENA]
¢þ
>WENV180018354
FSYX01000268
[FSYX] metagenome; soil
2290
2364
+
Arg
CCG
[ENA]
¢þ
>WENV180018351
FSYX01000204
[FSYX] metagenome; soil
2478
2552
+
Ile
GAT
[ENA]
¢þ
>WENV180018356
FSYX01000303
[FSYX] metagenome; soil
2495
2577
+
Leu
TAG
[ENA]
¢þ
>WENV180018363
FSYX01000413
[FSYX] metagenome; soil
2512
2595
+
Leu
CAG
[ENA]
¢þ
>WENV180018342
FSYX01000077
[FSYX] metagenome; soil
2524
2597
+
Ala
CGC
[ENA]
¢þ
>WENV180018352
FSYX01000204
[FSYX] metagenome; soil
2677
2750
+
Ala
TGC
[ENA]
¢þ
>WENV180018347
FSYX01000164
[FSYX] metagenome; soil
2894
2822
-
Arg
CCT
[ENA]
¢þ
>WENV180018361
FSYX01000375
[FSYX] metagenome; soil
3178
3104
-
Leu
TAA
[ENA]
¢þ
>WENV180018372
FSYX01000532
[FSYX] metagenome; soil
3711
3785
+
Pro
TGG
[ENA]
¢þ
>WENV180018367
FSYX01000469
[FSYX] metagenome; soil
4030
3955
-
Arg
ACG
[ENA]
¢þ
>WENV180018370
FSYX01000498
[FSYX] metagenome; soil
4380
4297
-
Leu
GAG
[ENA]
¢þ
>WENV180018357
FSYX01000317
[FSYX] metagenome; soil
5399
5316
-
Leu
CAA
[ENA]
¢þ
>WENV180018355
FSYX01000283
[FSYX] metagenome; soil
6019
5946
-
Arg
ACG
[ENA]
¢þ
>WENV180018348
FSYX01000177
[FSYX] metagenome; soil
6090
6015
-
His
GTG
[ENA]
¢þ
>WENV180018349
FSYX01000188
[FSYX] metagenome; soil
6407
6333
-
Met
CAT
[ENA]
¢þ
>WENV180018341
FSYX01000076
[FSYX] metagenome; soil
8452
8524
+
Gly
CCC
[ENA]
¢þ
>WENV180018358
FSYX01000321
[FSYX] metagenome; soil
9011
8938
-
Asn
GTT
[ENA]
¢þ
>WENV180018343
FSYX01000099
[FSYX] metagenome; soil
10453
10378
-
Ile2
CAT
[ENA]
¢þ
>WENV180018346
FSYX01000136
[FSYX] metagenome; soil
17219
17302
+
Tyr
GTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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