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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA gene List
[FTBN] metagenome; soil
HIT:
16 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180019219
FTBN01000086
[FTBN] metagenome; soil
73
162
+
Ser
TGA
[ENA]
¢þ
>WENV180019227
FTBN01000254
[FTBN] metagenome; soil
75
-1
-
Val
GAC
[ENA]
¢þ
>WENV180019229
FTBN01000276
[FTBN] metagenome; soil
88
13
-
Phe
GAA
[ENA]
¢þ
>WENV180019230
FTBN01000284
[FTBN] metagenome; soil
172
86
-
Leu
CAG
[ENA]
¢þ
>WENV180019222
FTBN01000124
[FTBN] metagenome; soil
316
223
-
Ser
GCT
[ENA]
¢þ
>WENV180019221
FTBN01000101
[FTBN] metagenome; soil
582
657
+
Thr
CGT
[ENA]
¢þ
>WENV180019226
FTBN01000219
[FTBN] metagenome; soil
627
701
+
Val
CAC
[ENA]
¢þ
>WENV180019223
FTBN01000151
[FTBN] metagenome; soil
1611
1698
+
Ser
TGA
[ENA]
¢þ
>WENV180019218
FTBN01000044
[FTBN] metagenome; soil
2307
2393
+
Leu
CAG
[ENA]
¢þ
>WENV180019224
FTBN01000161
[FTBN] metagenome; soil
2412
2326
-
Leu
TAG
[ENA]
¢þ
>WENV180019225
FTBN01000171
[FTBN] metagenome; soil
2903
2827
-
Arg
TCT
[ENA]
¢þ
>WENV180019216
FTBN01000027
[FTBN] metagenome; soil
3012
3099
+
Ser
CGA
[ENA]
¢þ
>WENV180019220
FTBN01000096
[FTBN] metagenome; soil
6982
7071
+
Ser
CGA
[ENA]
¢þ
>WENV180019228
FTBN01000273
[FTBN] metagenome; soil
14841
14765
-
fMet
CAT
[ENA]
¢þ
>WENV180019215
FTBN01000022
[FTBN] metagenome; soil
18997
18922
-
Ala
CGC
[ENA]
¢þ
>WENV180019217
FTBN01000028
[FTBN] metagenome; soil
128490
128414
-
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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