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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FTBO] metagenome; soil
HIT:
6 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180019234
FTBO01000317
[FTBO] metagenome; soil
2
76
+
Gly
GCC
[ENA]
¢þ
>WENV180019235
FTBO01000318
[FTBO] metagenome; soil
7
81
+
Thr
GGT
[ENA]
¢þ
>WENV180019232
FTBO01000286
[FTBO] metagenome; soil
272
348
+
Val
GAC
[ENA]
¢þ
>WENV180019231
FTBO01000191
[FTBO] metagenome; soil
636
711
+
Asn
GTT
[ENA]
¢þ
>WENV180019233
FTBO01000296
[FTBO] metagenome; soil
1640
1735
+
SeC
TCA
[ENA]
¢þ
>WENV180019236
FTBO01000345
[FTBO] metagenome; soil
6457
6373
-
Leu
TAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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