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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FTDZ] metagenome; soil
HIT:
10 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180021205
FTDZ01000743
[FTDZ] metagenome; soil
258
183
-
Glu
CTC
[ENA]
¢þ
>WENV180021198
FTDZ01000060
[FTDZ] metagenome; soil
548
473
-
Arg
CCT
[ENA]
¢þ
>WENV180021204
FTDZ01000708
[FTDZ] metagenome; soil
722
813
+
Ser
GGA
[ENA]
¢þ
>WENV180021206
FTDZ01000759
[FTDZ] metagenome; soil
1420
1330
-
Ser
GCT
[ENA]
¢þ
>WENV180021207
FTDZ01000780
[FTDZ] metagenome; soil
1711
1635
-
Arg
TCG
[ENA]
¢þ
>WENV180021202
FTDZ01000440
[FTDZ] metagenome; soil
1818
1894
+
Met
CAT
[ENA]
¢þ
>WENV180021200
FTDZ01000257
[FTDZ] metagenome; soil
2264
2191
-
Gln
CTG
[ENA]
¢þ
>WENV180021203
FTDZ01000454
[FTDZ] metagenome; soil
2654
2727
+
Gly
CCC
[ENA]
¢þ
>WENV180021199
FTDZ01000247
[FTDZ] metagenome; soil
2951
3026
+
Lys
TTT
[ENA]
¢þ
>WENV180021201
FTDZ01000398
[FTDZ] metagenome; soil
3165
3249
+
Leu
GAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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