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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[FTFU] metagenome; soil
HIT:
63 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180022233
FTFU01001763
[FTFU] metagenome; soil
17
106
+
Ser
GGA
[ENA]
¢þ
>WENV180022228
FTFU01001468
[FTFU] metagenome; soil
58
142
+
Leu
TAG
[ENA]
¢þ
>WENV180022247
FTFU01002329
[FTFU] metagenome; soil
74
148
+
Gly
CCC
[ENA]
¢þ
>WENV180022213
FTFU01001220
[FTFU] metagenome; soil
112
187
+
Thr
CGT
[ENA]
¢þ
>WENV180022214
FTFU01001242
[FTFU] metagenome; soil
113
40
-
Thr
TGT
[ENA]
¢þ
>WENV180022238
FTFU01001932
[FTFU] metagenome; soil
186
94
-
Ser
GCT
[ENA]
¢þ
>WENV180022254
FTFU01002429
[FTFU] metagenome; soil
377
302
-
Lys
CTT
[ENA]
¢þ
>WENV180022239
FTFU01001969
[FTFU] metagenome; soil
452
527
+
Trp
CCA
[ENA]
¢þ
>WENV180022245
FTFU01002185
[FTFU] metagenome; soil
518
602
+
Leu
GAG
[ENA]
¢þ
>WENV180022196
FTFU01000041
[FTFU] metagenome; soil
606
530
-
Val
TAC
[ENA]
¢þ
>WENV180022255
FTFU01002467
[FTFU] metagenome; soil
692
620
-
Arg
CCG
[ENA]
¢þ
>WENV180022219
FTFU01001361
[FTFU] metagenome; soil
834
908
+
Glu
TTC
[ENA]
¢þ
>WENV180022199
FTFU01000566
[FTFU] metagenome; soil
946
1019
+
Met
CAT
[ENA]
¢þ
>WENV180022200
FTFU01000778
[FTFU] metagenome; soil
1021
1109
+
Tyr
GTA
[ENA]
¢þ
>WENV180022201
FTFU01000778
[FTFU] metagenome; soil
1137
1212
+
Thr
GGT
[ENA]
¢þ
>WENV180022202
FTFU01000875
[FTFU] metagenome; soil
1138
1062
-
Val
CAC
[ENA]
¢þ
>WENV180022198
FTFU01000472
[FTFU] metagenome; soil
1208
1137
-
Gln
TTG
[ENA]
¢þ
>WENV180022240
FTFU01001987
[FTFU] metagenome; soil
1342
1268
-
Ile2
CAT
[ENA]
¢þ
>WENV180022257
FTFU01002485
[FTFU] metagenome; soil
1358
1434
+
Arg
CCG
[ENA]
¢þ
>WENV180022197
FTFU01000108
[FTFU] metagenome; soil
1370
1459
+
Ser
TGA
[ENA]
¢þ
>WENV180022242
FTFU01002019
[FTFU] metagenome; soil
1529
1603
+
Lys
TTT
[ENA]
¢þ
>WENV180022237
FTFU01001919
[FTFU] metagenome; soil
1566
1491
-
Lys
CTT
[ENA]
¢þ
>WENV180022210
FTFU01001209
[FTFU] metagenome; soil
1651
1727
+
Val
TAC
[ENA]
¢þ
>WENV180022249
FTFU01002375
[FTFU] metagenome; soil
1747
1672
-
Ala
CGC
[ENA]
¢þ
>WENV180022230
FTFU01001645
[FTFU] metagenome; soil
1858
1932
+
Asn
GTT
[ENA]
¢þ
>WENV180022246
FTFU01002320
[FTFU] metagenome; soil
1953
1878
-
Asn
GTT
[ENA]
¢þ
>WENV180022203
FTFU01000889
[FTFU] metagenome; soil
2100
2176
+
Met
CAT
[ENA]
¢þ
>WENV180022220
FTFU01001361
[FTFU] metagenome; soil
2166
2242
+
Pro
TGG
[ENA]
¢þ
>WENV180022241
FTFU01001997
[FTFU] metagenome; soil
2183
2111
-
Thr
GGT
[ENA]
¢þ
>WENV180022252
FTFU01002392
[FTFU] metagenome; soil
2349
2435
+
Leu
CAG
[ENA]
¢þ
>WENV180022231
FTFU01001724
[FTFU] metagenome; soil
2365
2454
+
Ser
TGA
[ENA]
¢þ
>WENV180022244
FTFU01002166
[FTFU] metagenome; soil
2428
2504
+
Arg
CCT
[ENA]
¢þ
>WENV180022236
FTFU01001830
[FTFU] metagenome; soil
2512
2586
+
Thr
GGT
[ENA]
¢þ
>WENV180022223
FTFU01001395
[FTFU] metagenome; soil
2553
2638
+
Tyr
GTA
[ENA]
¢þ
>WENV180022221
FTFU01001361
[FTFU] metagenome; soil
2590
2666
+
Arg
TCT
[ENA]
¢þ
>WENV180022225
FTFU01001397
[FTFU] metagenome; soil
2702
2776
+
Thr
GGT
[ENA]
¢þ
>WENV180022224
FTFU01001395
[FTFU] metagenome; soil
2789
2862
+
Gly
TCC
[ENA]
¢þ
>WENV180022251
FTFU01002389
[FTFU] metagenome; soil
3159
3070
-
Ser
TGA
[ENA]
¢þ
>WENV180022216
FTFU01001334
[FTFU] metagenome; soil
3502
3577
+
Ala
GGC
[ENA]
¢þ
>WENV180022232
FTFU01001730
[FTFU] metagenome; soil
3564
3653
+
Ser
CGA
[ENA]
¢þ
>WENV180022234
FTFU01001809
[FTFU] metagenome; soil
3865
3941
+
Met
CAT
[ENA]
¢þ
>WENV180022258
FTFU01002507
[FTFU] metagenome; soil
4179
4104
-
Lys
CTT
[ENA]
¢þ
>WENV180022243
FTFU01002115
[FTFU] metagenome; soil
4244
4318
+
Gly
CCC
[ENA]
¢þ
>WENV180022204
FTFU01000922
[FTFU] metagenome; soil
4296
4372
+
Val
TAC
[ENA]
¢þ
>WENV180022211
FTFU01001209
[FTFU] metagenome; soil
4385
4309
-
Asp
GTC
[ENA]
¢þ
>WENV180022227
FTFU01001455
[FTFU] metagenome; soil
4624
4700
+
Pro
GGG
[ENA]
¢þ
>WENV180022215
FTFU01001277
[FTFU] metagenome; soil
4738
4665
-
Cys
GCA
[ENA]
¢þ
>WENV180022248
FTFU01002348
[FTFU] metagenome; soil
5131
5057
-
Val
GAC
[ENA]
¢þ
>WENV180022226
FTFU01001434
[FTFU] metagenome; soil
5218
5302
+
Leu
TAA
[ENA]
¢þ
>WENV180022205
FTFU01000922
[FTFU] metagenome; soil
5573
5497
-
Asp
GTC
[ENA]
¢þ
>WENV180022209
FTFU01001171
[FTFU] metagenome; soil
5847
5758
-
Ser
TGA
[ENA]
¢þ
>WENV180022207
FTFU01001120
[FTFU] metagenome; soil
6402
6329
-
Gln
TTG
[ENA]
¢þ
>WENV180022206
FTFU01001120
[FTFU] metagenome; soil
6588
6664
+
Pro
CGG
[ENA]
¢þ
>WENV180022208
FTFU01001121
[FTFU] metagenome; soil
6604
6678
+
Val
CAC
[ENA]
¢þ
>WENV180022218
FTFU01001357
[FTFU] metagenome; soil
6719
6643
-
His
GTG
[ENA]
¢þ
>WENV180022235
FTFU01001827
[FTFU] metagenome; soil
6970
7045
+
Lys
CTT
[ENA]
¢þ
>WENV180022222
FTFU01001365
[FTFU] metagenome; soil
7745
7821
+
Arg
ACG
[ENA]
¢þ
>WENV180022256
FTFU01002473
[FTFU] metagenome; soil
8457
8368
-
Ser
TGA
[ENA]
¢þ
>WENV180022253
FTFU01002417
[FTFU] metagenome; soil
9684
9592
-
SeC
TCA
[ENA]
¢þ
>WENV180022229
FTFU01001524
[FTFU] metagenome; soil
12787
12862
+
Ile2
CAT
[ENA]
¢þ
>WENV180022212
FTFU01001211
[FTFU] metagenome; soil
13263
13337
+
Gly
GCC
[ENA]
¢þ
>WENV180022217
FTFU01001357
[FTFU] metagenome; soil
13619
13544
-
Phe
GAA
[ENA]
¢þ
>WENV180022250
FTFU01002382
[FTFU] metagenome; soil
23386
23297
-
Ser
CGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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