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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTGE] metagenome; soil
HIT:
34 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180022423
FTGE01001616
[FTGE] metagenome; soil
94
1
-
SeC
TCA
[ENA]
¢þ
>WENV180022430
FTGE01002312
[FTGE] metagenome; soil
114
188
+
His
GTG
[ENA]
¢þ
>WENV180022417
FTGE01001243
[FTGE] metagenome; soil
136
63
-
Val
CAC
[ENA]
¢þ
>WENV180022424
FTGE01001869
[FTGE] metagenome; soil
142
227
+
Leu
CAA
[ENA]
¢þ
>WENV180022404
FTGE01000882
[FTGE] metagenome; soil
144
226
+
Tyr
GTA
[ENA]
¢þ
>WENV180022397
FTGE01000159
[FTGE] metagenome; soil
186
262
+
Arg
CCG
[ENA]
¢þ
>WENV180022405
FTGE01000882
[FTGE] metagenome; soil
261
331
+
Gly
TCC
[ENA]
¢þ
>WENV180022422
FTGE01001572
[FTGE] metagenome; soil
678
750
+
Ala
GGC
[ENA]
¢þ
>WENV180022398
FTGE01000401
[FTGE] metagenome; soil
787
712
-
Thr
CGT
[ENA]
¢þ
>WENV180022412
FTGE01001115
[FTGE] metagenome; soil
1237
1311
+
Val
GAC
[ENA]
¢þ
>WENV180022429
FTGE01002232
[FTGE] metagenome; soil
1306
1382
+
Arg
CCG
[ENA]
¢þ
>WENV180022427
FTGE01002158
[FTGE] metagenome; soil
1416
1503
+
Ser
GGA
[ENA]
¢þ
>WENV180022421
FTGE01001551
[FTGE] metagenome; soil
1611
1538
-
Gly
GCC
[ENA]
¢þ
>WENV180022406
FTGE01000882
[FTGE] metagenome; soil
1943
2018
+
Trp
CCA
[ENA]
¢þ
>WENV180022399
FTGE01000753
[FTGE] metagenome; soil
1969
1897
-
Lys
CTT
[ENA]
¢þ
>WENV180022416
FTGE01001228
[FTGE] metagenome; soil
1992
1909
-
Leu
CAG
[ENA]
¢þ
>WENV180022407
FTGE01000919
[FTGE] metagenome; soil
2020
2106
+
Leu
GAG
[ENA]
¢þ
>WENV180022426
FTGE01002139
[FTGE] metagenome; soil
2167
2094
-
Ile2
CAT
[ENA]
¢þ
>WENV180022428
FTGE01002174
[FTGE] metagenome; soil
2255
2331
+
fMet
CAT
[ENA]
¢þ
>WENV180022400
FTGE01000820
[FTGE] metagenome; soil
2310
2237
-
Asn
GTT
[ENA]
¢þ
>WENV180022425
FTGE01001921
[FTGE] metagenome; soil
2713
2787
+
Pro
TGG
[ENA]
¢þ
>WENV180022408
FTGE01000989
[FTGE] metagenome; soil
2881
2805
-
Arg
CCG
[ENA]
¢þ
>WENV180022418
FTGE01001406
[FTGE] metagenome; soil
2896
2823
-
Ile
GAT
[ENA]
¢þ
>WENV180022420
FTGE01001505
[FTGE] metagenome; soil
2960
2887
-
Ala
CGC
[ENA]
¢þ
>WENV180022409
FTGE01000992
[FTGE] metagenome; soil
3007
3080
+
Lys
TTT
[ENA]
¢þ
>WENV180022414
FTGE01001209
[FTGE] metagenome; soil
3174
3104
-
Lys
TTT
[ENA]
¢þ
>WENV180022411
FTGE01001110
[FTGE] metagenome; soil
3825
3898
+
Arg
CCT
[ENA]
¢þ
>WENV180022413
FTGE01001193
[FTGE] metagenome; soil
5051
4981
-
Gln
CTG
[ENA]
¢þ
>WENV180022410
FTGE01001038
[FTGE] metagenome; soil
5216
5287
+
Arg
TCG
[ENA]
¢þ
>WENV180022403
FTGE01000877
[FTGE] metagenome; soil
5241
5313
+
Ala
CGC
[ENA]
¢þ
>WENV180022419
FTGE01001431
[FTGE] metagenome; soil
5317
5389
+
Phe
GAA
[ENA]
¢þ
>WENV180022401
FTGE01000827
[FTGE] metagenome; soil
7640
7566
-
Ala
TGC
[ENA]
¢þ
>WENV180022402
FTGE01000870
[FTGE] metagenome; soil
11081
10993
-
Ser
TGA
[ENA]
¢þ
>WENV180022415
FTGE01001214
[FTGE] metagenome; soil
24733
24805
+
Gly
CCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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