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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[LSRR] marine metagenome; iron chloride precipitation of viral particles from surface water samples
HIT:
21 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170727237
LSRR01000442
[LSRR] marine metagenome; iron chloride precipitation of viral particles from surface water samples
1417
1491
+
Leu
CAA
[ENA]
¢þ
>WENV170727248
LSRR01000840
[LSRR] marine metagenome; iron chloride precipitation of viral particles from surface water samples
2351
2422
+
Arg
CCG
[ENA]
¢þ
>WENV170727235
LSRR01000373
[LSRR] marine metagenome; iron chloride precipitation of viral particles from surface water samples
2385
2461
+
Glu
TTC
[ENA]
¢þ
>WENV170727236
LSRR01000373
[LSRR] marine metagenome; iron chloride precipitation of viral particles from surface water samples
2704
2780
+
Arg
ACG
[ENA]
¢þ
>WENV170727234
LSRR01000312
[LSRR] marine metagenome; iron chloride precipitation of viral particles from surface water samples
3254
3179
-
Met
CAT
[ENA]
¢þ
>WENV170727242
LSRR01000480
[LSRR] marine metagenome; iron chloride precipitation of viral particles from surface water samples
6419
6490
+
Thr
TGT
[ENA]
¢þ
>WENV170727243
LSRR01000480
[LSRR] marine metagenome; iron chloride precipitation of viral particles from surface water samples
7525
7597
+
Leu
TAA
[ENA]
¢þ
>WENV170727228
LSRR01000188
[LSRR] marine metagenome; iron chloride precipitation of viral particles from surface water samples
9042
9117
+
Met
CAT
[ENA]
¢þ
>WENV170727244
LSRR01000480
[LSRR] marine metagenome; iron chloride precipitation of viral particles from surface water samples
9120
9194
+
Arg
TCT
[ENA]
¢þ
>WENV170727245
LSRR01000480
[LSRR] marine metagenome; iron chloride precipitation of viral particles from surface water samples
9197
9270
+
Lys
TTT
[ENA]
¢þ
>WENV170727233
LSRR01000312
[LSRR] marine metagenome; iron chloride precipitation of viral particles from surface water samples
9808
9735
-
Arg
TCT
[ENA]
¢þ
>WENV170727230
LSRR01000248
[LSRR] marine metagenome; iron chloride precipitation of viral particles from surface water samples
12214
12290
+
Arg
TCT
[ENA]
¢þ
>WENV170727247
LSRR01000611
[LSRR] marine metagenome; iron chloride precipitation of viral particles from surface water samples
17781
17855
+
Met
CAT
[ENA]
¢þ
>WENV170727246
LSRR01000582
[LSRR] marine metagenome; iron chloride precipitation of viral particles from surface water samples
19624
19548
-
Arg
TCT
[ENA]
¢þ
>WENV170727231
LSRR01000307
[LSRR] marine metagenome; iron chloride precipitation of viral particles from surface water samples
19651
19727
+
Arg
TCT
[ENA]
¢þ
>WENV170727229
LSRR01000220
[LSRR] marine metagenome; iron chloride precipitation of viral particles from surface water samples
33293
33367
+
Met
CAT
[ENA]
¢þ
>WENV170727232
LSRR01000310
[LSRR] marine metagenome; iron chloride precipitation of viral particles from surface water samples
40603
40679
+
Arg
TCT
[ENA]
¢þ
>WENV170727241
LSRR01000443
[LSRR] marine metagenome; iron chloride precipitation of viral particles from surface water samples
59091
59015
-
Arg
TCG
[ENA]
¢þ
>WENV170727240
LSRR01000443
[LSRR] marine metagenome; iron chloride precipitation of viral particles from surface water samples
59248
59174
-
Cys
GCA
[ENA]
¢þ
>WENV170727239
LSRR01000443
[LSRR] marine metagenome; iron chloride precipitation of viral particles from surface water samples
60861
60786
-
Trp
CCA
[ENA]
¢þ
>WENV170727238
LSRR01000443
[LSRR] marine metagenome; iron chloride precipitation of viral particles from surface water samples
62178
62104
-
Gly
GCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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