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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OATF] human gut metagenome; faeces
HIT:
149 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180130175
OATF01002735
[OATF] human gut metagenome; faeces
14
88
+
Glu
TTC
[ENA]
¢þ
>WENV180130192
OATF01003894
[OATF] human gut metagenome; faeces
15
87
+
Thr
GGT
[ENA]
¢þ
>WENV180130174
OATF01002586
[OATF] human gut metagenome; faeces
34
105
+
Gln
TTG
[ENA]
¢þ
>WENV180130198
OATF01004934
[OATF] human gut metagenome; faeces
45
118
+
Pro
CGG
[ENA]
¢þ
>WENV180130189
OATF01003389
[OATF] human gut metagenome; faeces
51
126
+
Phe
GAA
[ENA]
¢þ
>WENV180130163
OATF01001184
[OATF] human gut metagenome; faeces
55
129
+
Val
TAC
[ENA]
¢þ
>WENV180130065
OATF01000002
[OATF] human gut metagenome; faeces
62
137
+
Thr
GGT
[ENA]
¢þ
>WENV180130208
OATF01009205
[OATF] human gut metagenome; faeces
75
1
-
Arg
ACG
[ENA]
¢þ
>WENV180130210
OATF01009229
[OATF] human gut metagenome; faeces
77
1
-
Asp
GTC
[ENA]
¢þ
>WENV180130209
OATF01009210
[OATF] human gut metagenome; faeces
78
3
-
Lys
TTT
[ENA]
¢þ
>WENV180130194
OATF01004277
[OATF] human gut metagenome; faeces
85
156
+
Gln
TTG
[ENA]
¢þ
>WENV180130183
OATF01003291
[OATF] human gut metagenome; faeces
86
158
+
Val
GAC
[ENA]
¢þ
>WENV180130197
OATF01004340
[OATF] human gut metagenome; faeces
90
16
-
Phe
GAA
[ENA]
¢þ
>WENV180130204
OATF01008456
[OATF] human gut metagenome; faeces
91
18
-
Ala
GGC
[ENA]
¢þ
>WENV180130176
OATF01002735
[OATF] human gut metagenome; faeces
96
169
+
Gly
TCC
[ENA]
¢þ
>WENV180130207
OATF01009202
[OATF] human gut metagenome; faeces
100
175
+
Val
TAC
[ENA]
¢þ
>WENV180130206
OATF01008682
[OATF] human gut metagenome; faeces
101
17
-
Leu
GAG
[ENA]
¢þ
>WENV180130114
OATF01000022
[OATF] human gut metagenome; faeces
102
178
+
Asp
GTC
[ENA]
¢þ
>WENV180130201
OATF01005454
[OATF] human gut metagenome; faeces
108
188
+
Leu
TAA
[ENA]
¢þ
>WENV180130158
OATF01000615
[OATF] human gut metagenome; faeces
109
23
-
Leu
CAG
[ENA]
¢þ
>WENV180130200
OATF01005222
[OATF] human gut metagenome; faeces
123
38
-
Ser
TGA
[ENA]
¢þ
>WENV180130202
OATF01006171
[OATF] human gut metagenome; faeces
131
219
+
Leu
GAG
[ENA]
¢þ
>WENV180130199
OATF01005209
[OATF] human gut metagenome; faeces
133
59
-
Pro
CGG
[ENA]
¢þ
>WENV180130190
OATF01003389
[OATF] human gut metagenome; faeces
135
211
+
Met
CAT
[ENA]
¢þ
>WENV180130187
OATF01003334
[OATF] human gut metagenome; faeces
136
61
-
Lys
TTT
[ENA]
¢þ
>WENV180130154
OATF01000430
[OATF] human gut metagenome; faeces
162
248
+
Ser
CGA
[ENA]
¢þ
>WENV180130170
OATF01001725
[OATF] human gut metagenome; faeces
169
96
-
Asn
GTT
[ENA]
¢þ
>WENV180130196
OATF01004340
[OATF] human gut metagenome; faeces
170
95
-
Asp
GTC
[ENA]
¢þ
>WENV180130153
OATF01000412
[OATF] human gut metagenome; faeces
170
96
-
Arg
CCT
[ENA]
¢þ
>WENV180130180
OATF01003121
[OATF] human gut metagenome; faeces
173
99
-
Thr
TGT
[ENA]
¢þ
>WENV180130177
OATF01002735
[OATF] human gut metagenome; faeces
174
249
+
Val
TAC
[ENA]
¢þ
>WENV180130115
OATF01000022
[OATF] human gut metagenome; faeces
187
262
+
Trp
CCA
[ENA]
¢þ
>WENV180130182
OATF01003219
[OATF] human gut metagenome; faeces
192
117
-
Ala
TGC
[ENA]
¢þ
>WENV180130193
OATF01003943
[OATF] human gut metagenome; faeces
202
127
-
Glu
TTC
[ENA]
¢þ
>WENV180130205
OATF01008682
[OATF] human gut metagenome; faeces
205
124
-
Leu
CAG
[ENA]
¢þ
>WENV180130184
OATF01003291
[OATF] human gut metagenome; faeces
206
280
+
Val
CAC
[ENA]
¢þ
>WENV180130203
OATF01007653
[OATF] human gut metagenome; faeces
207
137
-
Gly
CCC
[ENA]
¢þ
>WENV180130188
OATF01003369
[OATF] human gut metagenome; faeces
215
142
-
Lys
TTT
[ENA]
¢þ
>WENV180130191
OATF01003389
[OATF] human gut metagenome; faeces
221
297
+
Ile2
CAT
[ENA]
¢þ
>WENV180130186
OATF01003334
[OATF] human gut metagenome; faeces
229
154
-
Gln
TTG
[ENA]
¢þ
>WENV180130166
OATF01001342
[OATF] human gut metagenome; faeces
244
319
+
Arg
CCG
[ENA]
¢þ
>WENV180130178
OATF01002735
[OATF] human gut metagenome; faeces
261
337
+
Asp
GTC
[ENA]
¢þ
>WENV180130195
OATF01004340
[OATF] human gut metagenome; faeces
263
176
-
Ser
TGA
[ENA]
¢þ
>WENV180130168
OATF01001540
[OATF] human gut metagenome; faeces
304
380
+
fMet
CAT
[ENA]
¢þ
>WENV180130181
OATF01003219
[OATF] human gut metagenome; faeces
311
235
-
Ile
GAT
[ENA]
¢þ
>WENV180130185
OATF01003334
[OATF] human gut metagenome; faeces
313
237
-
Arg
TCT
[ENA]
¢þ
>WENV180130172
OATF01002385
[OATF] human gut metagenome; faeces
339
266
-
Gln
TTG
[ENA]
¢þ
>WENV180130179
OATF01002735
[OATF] human gut metagenome; faeces
353
427
+
Thr
TGT
[ENA]
¢þ
>WENV180130173
OATF01002513
[OATF] human gut metagenome; faeces
383
309
-
Leu
CAA
[ENA]
¢þ
>WENV180130160
OATF01000770
[OATF] human gut metagenome; faeces
385
300
-
Leu
CAG
[ENA]
¢þ
>WENV180130169
OATF01001663
[OATF] human gut metagenome; faeces
466
539
+
Gly
GCC
[ENA]
¢þ
>WENV180130171
OATF01002198
[OATF] human gut metagenome; faeces
473
400
-
Lys
TTT
[ENA]
¢þ
>WENV180130164
OATF01001238
[OATF] human gut metagenome; faeces
480
552
+
Glu
TTC
[ENA]
¢þ
>WENV180130167
OATF01001415
[OATF] human gut metagenome; faeces
497
424
-
Gly
CCC
[ENA]
¢þ
>WENV180130162
OATF01001106
[OATF] human gut metagenome; faeces
508
421
-
Ser
GGA
[ENA]
¢þ
>WENV180130155
OATF01000463
[OATF] human gut metagenome; faeces
511
587
+
Asp
GTC
[ENA]
¢þ
>WENV180130157
OATF01000494
[OATF] human gut metagenome; faeces
521
447
-
Asp
GTC
[ENA]
¢þ
>WENV180130165
OATF01001336
[OATF] human gut metagenome; faeces
545
473
-
Arg
CCT
[ENA]
¢þ
>WENV180130128
OATF01000032
[OATF] human gut metagenome; faeces
578
504
-
Gly
TCC
[ENA]
¢þ
>WENV180130161
OATF01001083
[OATF] human gut metagenome; faeces
596
669
+
Glu
CTC
[ENA]
¢þ
>WENV180130136
OATF01000053
[OATF] human gut metagenome; faeces
611
685
+
Ile
GAT
[ENA]
¢þ
>WENV180130159
OATF01000704
[OATF] human gut metagenome; faeces
628
554
-
Lys
CTT
[ENA]
¢þ
>WENV180130127
OATF01000032
[OATF] human gut metagenome; faeces
657
582
-
Thr
TGT
[ENA]
¢þ
>WENV180130156
OATF01000494
[OATF] human gut metagenome; faeces
695
620
-
Gln
TTG
[ENA]
¢þ
>WENV180130137
OATF01000053
[OATF] human gut metagenome; faeces
741
815
+
Ala
TGC
[ENA]
¢þ
>WENV180130152
OATF01000329
[OATF] human gut metagenome; faeces
777
700
-
Leu
TAA
[ENA]
¢þ
>WENV180130126
OATF01000032
[OATF] human gut metagenome; faeces
813
738
-
Ile2
CAT
[ENA]
¢þ
>WENV180130151
OATF01000108
[OATF] human gut metagenome; faeces
2170
2096
-
Ala
TGC
[ENA]
¢þ
>WENV180130150
OATF01000108
[OATF] human gut metagenome; faeces
2261
2187
-
Ile
GAT
[ENA]
¢þ
>WENV180130135
OATF01000051
[OATF] human gut metagenome; faeces
2576
2501
-
Ala
GGC
[ENA]
¢þ
>WENV180130134
OATF01000051
[OATF] human gut metagenome; faeces
2691
2616
-
Ala
GGC
[ENA]
¢þ
>WENV180130146
OATF01000055
[OATF] human gut metagenome; faeces
3515
3590
+
Thr
TGT
[ENA]
¢þ
>WENV180130147
OATF01000055
[OATF] human gut metagenome; faeces
3599
3683
+
Tyr
GTA
[ENA]
¢þ
>WENV180130148
OATF01000055
[OATF] human gut metagenome; faeces
3800
3874
+
Gly
TCC
[ENA]
¢þ
>WENV180130149
OATF01000055
[OATF] human gut metagenome; faeces
3881
3956
+
Thr
GGT
[ENA]
¢þ
>WENV180130138
OATF01000053
[OATF] human gut metagenome; faeces
4036
4110
+
Val
TAC
[ENA]
¢þ
>WENV180130139
OATF01000053
[OATF] human gut metagenome; faeces
4114
4186
+
Lys
TTT
[ENA]
¢þ
>WENV180130140
OATF01000053
[OATF] human gut metagenome; faeces
4199
4282
+
Leu
TAG
[ENA]
¢þ
>WENV180130131
OATF01000035
[OATF] human gut metagenome; faeces
4291
4216
-
Ile2
CAT
[ENA]
¢þ
>WENV180130141
OATF01000053
[OATF] human gut metagenome; faeces
4305
4379
+
Thr
TGT
[ENA]
¢þ
>WENV180130142
OATF01000053
[OATF] human gut metagenome; faeces
4389
4463
+
Gly
GCC
[ENA]
¢þ
>WENV180130143
OATF01000053
[OATF] human gut metagenome; faeces
4472
4557
+
Leu
TAA
[ENA]
¢þ
>WENV180130144
OATF01000053
[OATF] human gut metagenome; faeces
4565
4640
+
Arg
ACG
[ENA]
¢þ
>WENV180130145
OATF01000053
[OATF] human gut metagenome; faeces
4645
4718
+
Pro
TGG
[ENA]
¢þ
>WENV180130096
OATF01000012
[OATF] human gut metagenome; faeces
5011
4937
-
Arg
CCT
[ENA]
¢þ
>WENV180130133
OATF01000051
[OATF] human gut metagenome; faeces
5390
5465
+
Val
TAC
[ENA]
¢þ
>WENV180130125
OATF01000032
[OATF] human gut metagenome; faeces
13755
13666
-
Ser
CGA
[ENA]
¢þ
>WENV180130121
OATF01000032
[OATF] human gut metagenome; faeces
14747
14822
+
Asn
GTT
[ENA]
¢þ
>WENV180130092
OATF01000011
[OATF] human gut metagenome; faeces
15500
15576
+
fMet
CAT
[ENA]
¢þ
>WENV180130093
OATF01000011
[OATF] human gut metagenome; faeces
15610
15686
+
fMet
CAT
[ENA]
¢þ
>WENV180130094
OATF01000011
[OATF] human gut metagenome; faeces
15720
15796
+
fMet
CAT
[ENA]
¢þ
>WENV180130132
OATF01000038
[OATF] human gut metagenome; faeces
25804
25879
+
Phe
GAA
[ENA]
¢þ
>WENV180130073
OATF01000004
[OATF] human gut metagenome; faeces
28338
28413
+
Thr
CGT
[ENA]
¢þ
>WENV180130130
OATF01000034
[OATF] human gut metagenome; faeces
29419
29343
-
Asp
GTC
[ENA]
¢þ
>WENV180130124
OATF01000032
[OATF] human gut metagenome; faeces
29817
29742
-
Asn
GTT
[ENA]
¢þ
>WENV180130122
OATF01000032
[OATF] human gut metagenome; faeces
31566
31641
+
Asn
GTT
[ENA]
¢þ
>WENV180130123
OATF01000032
[OATF] human gut metagenome; faeces
33975
34050
+
Asn
GTT
[ENA]
¢þ
>WENV180130116
OATF01000022
[OATF] human gut metagenome; faeces
35465
35541
+
Arg
CCG
[ENA]
¢þ
>WENV180130117
OATF01000022
[OATF] human gut metagenome; faeces
35600
35675
+
His
GTG
[ENA]
¢þ
>WENV180130118
OATF01000022
[OATF] human gut metagenome; faeces
35696
35782
+
Leu
CAG
[ENA]
¢þ
>WENV180130119
OATF01000022
[OATF] human gut metagenome; faeces
35825
35901
+
Pro
TGG
[ENA]
¢þ
>WENV180130129
OATF01000034
[OATF] human gut metagenome; faeces
37641
37565
-
Asp
GTC
[ENA]
¢þ
>WENV180130083
OATF01000009
[OATF] human gut metagenome; faeces
40271
40347
+
Met
CAT
[ENA]
¢þ
>WENV180130084
OATF01000009
[OATF] human gut metagenome; faeces
40356
40440
+
Leu
TAG
[ENA]
¢þ
>WENV180130085
OATF01000009
[OATF] human gut metagenome; faeces
40464
40538
+
Gln
TTG
[ENA]
¢þ
>WENV180130086
OATF01000009
[OATF] human gut metagenome; faeces
40573
40647
+
Gln
TTG
[ENA]
¢þ
>WENV180130087
OATF01000009
[OATF] human gut metagenome; faeces
40663
40739
+
Met
CAT
[ENA]
¢þ
>WENV180130088
OATF01000009
[OATF] human gut metagenome; faeces
40788
40862
+
Gln
CTG
[ENA]
¢þ
>WENV180130089
OATF01000009
[OATF] human gut metagenome; faeces
40900
40974
+
Gln
CTG
[ENA]
¢þ
>WENV180130113
OATF01000020
[OATF] human gut metagenome; faeces
41466
41390
-
Pro
CGG
[ENA]
¢þ
>WENV180130097
OATF01000013
[OATF] human gut metagenome; faeces
51833
51908
+
Lys
TTT
[ENA]
¢þ
>WENV180130098
OATF01000013
[OATF] human gut metagenome; faeces
52044
52119
+
Val
TAC
[ENA]
¢þ
>WENV180130099
OATF01000013
[OATF] human gut metagenome; faeces
52122
52197
+
Lys
TTT
[ENA]
¢þ
>WENV180130100
OATF01000013
[OATF] human gut metagenome; faeces
52249
52324
+
Val
TAC
[ENA]
¢þ
>WENV180130101
OATF01000013
[OATF] human gut metagenome; faeces
52327
52402
+
Lys
TTT
[ENA]
¢þ
>WENV180130102
OATF01000013
[OATF] human gut metagenome; faeces
52451
52526
+
Lys
TTT
[ENA]
¢þ
>WENV180130103
OATF01000013
[OATF] human gut metagenome; faeces
52560
52635
+
Lys
TTT
[ENA]
¢þ
>WENV180130110
OATF01000019
[OATF] human gut metagenome; faeces
54548
54623
+
Gly
GCC
[ENA]
¢þ
>WENV180130111
OATF01000019
[OATF] human gut metagenome; faeces
54678
54751
+
Cys
GCA
[ENA]
¢þ
>WENV180130112
OATF01000019
[OATF] human gut metagenome; faeces
54764
54850
+
Leu
TAA
[ENA]
¢þ
>WENV180130120
OATF01000025
[OATF] human gut metagenome; faeces
59112
59206
+
SeC
TCA
[ENA]
¢þ
>WENV180130104
OATF01000015
[OATF] human gut metagenome; faeces
73828
73741
-
Ser
GGA
[ENA]
¢þ
>WENV180130095
OATF01000011
[OATF] human gut metagenome; faeces
83109
83036
-
Gly
CCC
[ENA]
¢þ
>WENV180130082
OATF01000007
[OATF] human gut metagenome; faeces
91023
90947
-
Val
GAC
[ENA]
¢þ
>WENV180130081
OATF01000007
[OATF] human gut metagenome; faeces
91104
91028
-
Val
GAC
[ENA]
¢þ
>WENV180130066
OATF01000002
[OATF] human gut metagenome; faeces
94107
94193
+
Leu
GAG
[ENA]
¢þ
>WENV180130078
OATF01000005
[OATF] human gut metagenome; faeces
96874
96799
-
Phe
GAA
[ENA]
¢þ
>WENV180130067
OATF01000002
[OATF] human gut metagenome; faeces
97974
98050
+
fMet
CAT
[ENA]
¢þ
>WENV180130072
OATF01000003
[OATF] human gut metagenome; faeces
103452
103378
-
Gly
TCC
[ENA]
¢þ
>WENV180130071
OATF01000003
[OATF] human gut metagenome; faeces
103531
103456
-
Thr
TGT
[ENA]
¢þ
>WENV180130105
OATF01000017
[OATF] human gut metagenome; faeces
111720
111812
+
Ser
GCT
[ENA]
¢þ
>WENV180130106
OATF01000017
[OATF] human gut metagenome; faeces
111816
111892
+
Arg
ACG
[ENA]
¢þ
>WENV180130107
OATF01000017
[OATF] human gut metagenome; faeces
112091
112167
+
Arg
ACG
[ENA]
¢þ
>WENV180130108
OATF01000017
[OATF] human gut metagenome; faeces
112231
112307
+
Arg
ACG
[ENA]
¢þ
>WENV180130109
OATF01000017
[OATF] human gut metagenome; faeces
112371
112447
+
Arg
ACG
[ENA]
¢þ
>WENV180130079
OATF01000006
[OATF] human gut metagenome; faeces
112454
112541
+
Ser
GGA
[ENA]
¢þ
>WENV180130074
OATF01000005
[OATF] human gut metagenome; faeces
126029
126104
+
Gly
GCC
[ENA]
¢þ
>WENV180130075
OATF01000005
[OATF] human gut metagenome; faeces
126262
126337
+
Gly
GCC
[ENA]
¢þ
>WENV180130076
OATF01000005
[OATF] human gut metagenome; faeces
126373
126448
+
Gly
GCC
[ENA]
¢þ
>WENV180130090
OATF01000009
[OATF] human gut metagenome; faeces
139635
139559
-
Arg
TCT
[ENA]
¢þ
>WENV180130091
OATF01000010
[OATF] human gut metagenome; faeces
158847
158923
+
Pro
GGG
[ENA]
¢þ
>WENV180130068
OATF01000002
[OATF] human gut metagenome; faeces
196077
196002
-
Ile2
CAT
[ENA]
¢þ
>WENV180130080
OATF01000006
[OATF] human gut metagenome; faeces
207794
207881
+
Ser
TGA
[ENA]
¢þ
>WENV180130077
OATF01000005
[OATF] human gut metagenome; faeces
235615
235699
+
Leu
CAA
[ENA]
¢þ
>WENV180130069
OATF01000003
[OATF] human gut metagenome; faeces
240173
240257
+
Tyr
GTA
[ENA]
¢þ
>WENV180130070
OATF01000003
[OATF] human gut metagenome; faeces
240292
240376
+
Tyr
GTA
[ENA]
¢þ
>WENV180130062
OATF01000001
[OATF] human gut metagenome; faeces
263471
263557
+
Leu
CAG
[ENA]
¢þ
>WENV180130063
OATF01000001
[OATF] human gut metagenome; faeces
263586
263672
+
Leu
CAG
[ENA]
¢þ
>WENV180130064
OATF01000001
[OATF] human gut metagenome; faeces
263707
263793
+
Leu
CAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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