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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OBET] marine metagenome; marine
HIT:
70 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180273557
OBET01002757
[OBET] marine metagenome; marine
6
79
+
Asn
GTT
[ENA]
¢þ
>WENV180273504
OBET01000335
[OBET] marine metagenome; marine
105
179
+
Phe
GAA
[ENA]
¢þ
>WENV180273555
OBET01002449
[OBET] marine metagenome; marine
150
226
+
Ile
GAT
[ENA]
¢þ
>WENV180273554
OBET01002438
[OBET] marine metagenome; marine
153
229
+
Ile
GAT
[ENA]
¢þ
>WENV180273547
OBET01001313
[OBET] marine metagenome; marine
181
106
-
Trp
CCA
[ENA]
¢þ
>WENV180273515
OBET01000637
[OBET] marine metagenome; marine
230
146
-
Leu
TAG
[ENA]
¢þ
>WENV180273556
OBET01002549
[OBET] marine metagenome; marine
240
165
-
Ala
TGC
[ENA]
¢þ
>WENV180273537
OBET01000948
[OBET] marine metagenome; marine
241
317
+
Pro
TGG
[ENA]
¢þ
>WENV180273522
OBET01000712
[OBET] marine metagenome; marine
254
179
-
Arg
CCT
[ENA]
¢þ
>WENV180273509
OBET01000529
[OBET] marine metagenome; marine
264
337
+
Pro
GGG
[ENA]
¢þ
>WENV180273540
OBET01000985
[OBET] marine metagenome; marine
290
206
-
Leu
AAG
[ENA]
¢þ
>WENV180273552
OBET01001468
[OBET] marine metagenome; marine
301
376
+
Arg
ACG
[ENA]
¢þ
>WENV180273536
OBET01000945
[OBET] marine metagenome; marine
333
260
-
Gln
TTG
[ENA]
¢þ
>WENV180273532
OBET01000836
[OBET] marine metagenome; marine
333
408
+
Asp
GTC
[ENA]
¢þ
>WENV180273548
OBET01001345
[OBET] marine metagenome; marine
334
410
+
Arg
TCT
[ENA]
¢þ
>WENV180273505
OBET01000344
[OBET] marine metagenome; marine
364
447
+
Leu
AAG
[ENA]
¢þ
>WENV180273546
OBET01001223
[OBET] marine metagenome; marine
379
471
+
SeC
TCA
[ENA]
¢þ
>WENV180273551
OBET01001465
[OBET] marine metagenome; marine
385
461
+
Arg
ACG
[ENA]
¢þ
>WENV180273544
OBET01001197
[OBET] marine metagenome; marine
396
472
+
fMet
CAT
[ENA]
¢þ
>WENV180273539
OBET01000965
[OBET] marine metagenome; marine
412
483
+
Val
TAC
[ENA]
¢þ
>WENV180273533
OBET01000879
[OBET] marine metagenome; marine
422
497
+
Trp
CCA
[ENA]
¢þ
>WENV180273513
OBET01000600
[OBET] marine metagenome; marine
456
531
+
Thr
TGT
[ENA]
¢þ
>WENV180273514
OBET01000621
[OBET] marine metagenome; marine
502
576
+
Pro
TGG
[ENA]
¢þ
>WENV180273541
OBET01000997
[OBET] marine metagenome; marine
506
581
+
Gly
GCC
[ENA]
¢þ
>WENV180273553
OBET01001603
[OBET] marine metagenome; marine
511
422
-
Ser
GGA
[ENA]
¢þ
>WENV180273510
OBET01000530
[OBET] marine metagenome; marine
526
451
-
Thr
TGT
[ENA]
¢þ
>WENV180273518
OBET01000660
[OBET] marine metagenome; marine
551
625
+
Glu
TTC
[ENA]
¢þ
>WENV180273527
OBET01000796
[OBET] marine metagenome; marine
553
463
-
Ser
GCT
[ENA]
¢þ
>WENV180273516
OBET01000653
[OBET] marine metagenome; marine
560
634
+
Asp
GTC
[ENA]
¢þ
>WENV180273495
OBET01000145
[OBET] marine metagenome; marine
562
478
-
Ser
CGA
[ENA]
¢þ
>WENV180273523
OBET01000739
[OBET] marine metagenome; marine
575
649
+
Gln
TTG
[ENA]
¢þ
>WENV180273543
OBET01001074
[OBET] marine metagenome; marine
576
652
+
Pro
TGG
[ENA]
¢þ
>WENV180273488
OBET01000071
[OBET] marine metagenome; marine
586
678
+
SeC
TCA
[ENA]
¢þ
>WENV180273538
OBET01000961
[OBET] marine metagenome; marine
591
515
-
Arg
CCG
[ENA]
¢þ
>WENV180273542
OBET01001009
[OBET] marine metagenome; marine
619
693
+
Asn
GTT
[ENA]
¢þ
>WENV180273506
OBET01000399
[OBET] marine metagenome; marine
635
559
-
Arg
TCG
[ENA]
¢þ
>WENV180273519
OBET01000684
[OBET] marine metagenome; marine
639
712
+
Ala
GGC
[ENA]
¢þ
>WENV180273531
OBET01000807
[OBET] marine metagenome; marine
645
570
-
Thr
GGT
[ENA]
¢þ
>WENV180273503
OBET01000318
[OBET] marine metagenome; marine
681
599
-
Leu
CAA
[ENA]
¢þ
>WENV180273524
OBET01000779
[OBET] marine metagenome; marine
701
774
+
Thr
TGT
[ENA]
¢þ
>WENV180273517
OBET01000656
[OBET] marine metagenome; marine
714
790
+
Thr
TGT
[ENA]
¢þ
>WENV180273530
OBET01000807
[OBET] marine metagenome; marine
720
647
-
Gly
TCC
[ENA]
¢þ
>WENV180273550
OBET01001427
[OBET] marine metagenome; marine
721
645
-
Asp
GTC
[ENA]
¢þ
>WENV180273521
OBET01000702
[OBET] marine metagenome; marine
726
649
-
Asp
GTC
[ENA]
¢þ
>WENV180273528
OBET01000797
[OBET] marine metagenome; marine
751
674
-
Arg
TCG
[ENA]
¢þ
>WENV180273535
OBET01000903
[OBET] marine metagenome; marine
753
677
-
fMet
CAT
[ENA]
¢þ
>WENV180273525
OBET01000793
[OBET] marine metagenome; marine
756
845
+
Ser
TGA
[ENA]
¢þ
>WENV180273534
OBET01000896
[OBET] marine metagenome; marine
760
683
-
Ile
GAT
[ENA]
¢þ
>WENV180273526
OBET01000795
[OBET] marine metagenome; marine
775
851
+
fMet
CAT
[ENA]
¢þ
>WENV180273500
OBET01000293
[OBET] marine metagenome; marine
780
704
-
Ile2
CAT
[ENA]
¢þ
>WENV180273507
OBET01000413
[OBET] marine metagenome; marine
793
717
-
Met
CAT
[ENA]
¢þ
>WENV180273549
OBET01001427
[OBET] marine metagenome; marine
800
725
-
Val
TAC
[ENA]
¢þ
>WENV180273520
OBET01000702
[OBET] marine metagenome; marine
806
731
-
Val
TAC
[ENA]
¢þ
>WENV180273499
OBET01000268
[OBET] marine metagenome; marine
815
721
-
Ser
GCT
[ENA]
¢þ
>WENV180273496
OBET01000196
[OBET] marine metagenome; marine
837
762
-
Met
CAT
[ENA]
¢þ
>WENV180273529
OBET01000807
[OBET] marine metagenome; marine
851
766
-
Tyr
GTA
[ENA]
¢þ
>WENV180273497
OBET01000209
[OBET] marine metagenome; marine
905
829
-
Arg
ACG
[ENA]
¢þ
>WENV180273545
OBET01001212
[OBET] marine metagenome; marine
1001
1073
+
Thr
CGT
[ENA]
¢þ
>WENV180273508
OBET01000524
[OBET] marine metagenome; marine
1024
951
-
Arg
CCG
[ENA]
¢þ
>WENV180273494
OBET01000121
[OBET] marine metagenome; marine
1031
956
-
His
GTG
[ENA]
¢þ
>WENV180273512
OBET01000595
[OBET] marine metagenome; marine
1041
966
-
Asn
GTT
[ENA]
¢þ
>WENV180273498
OBET01000213
[OBET] marine metagenome; marine
1099
1172
+
His
GTG
[ENA]
¢þ
>WENV180273493
OBET01000121
[OBET] marine metagenome; marine
1110
1035
-
Arg
TCT
[ENA]
¢þ
>WENV180273501
OBET01000313
[OBET] marine metagenome; marine
1121
1195
+
Ile
GAT
[ENA]
¢þ
>WENV180273511
OBET01000595
[OBET] marine metagenome; marine
1162
1089
-
Cys
GCA
[ENA]
¢þ
>WENV180273492
OBET01000121
[OBET] marine metagenome; marine
1187
1116
-
Gly
TCC
[ENA]
¢þ
>WENV180273502
OBET01000313
[OBET] marine metagenome; marine
1264
1338
+
Ala
TGC
[ENA]
¢þ
>WENV180273491
OBET01000121
[OBET] marine metagenome; marine
1267
1192
-
Pro
TGG
[ENA]
¢þ
>WENV180273489
OBET01000121
[OBET] marine metagenome; marine
1363
1436
+
Lys
CTT
[ENA]
¢þ
>WENV180273490
OBET01000121
[OBET] marine metagenome; marine
1447
1530
+
Leu
TAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK