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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OBEU] marine metagenome; marine
HIT:
91 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180273648
OBEU01004100
[OBEU] marine metagenome; marine
44
116
+
Gln
TTG
[ENA]
¢þ
>WENV180273646
OBEU01003405
[OBEU] marine metagenome; marine
99
15
-
Leu
TAA
[ENA]
¢þ
>WENV180273638
OBEU01002276
[OBEU] marine metagenome; marine
103
17
-
Leu
CAA
[ENA]
¢þ
>WENV180273603
OBEU01000479
[OBEU] marine metagenome; marine
109
36
-
Thr
TGT
[ENA]
¢þ
>WENV180273647
OBEU01003951
[OBEU] marine metagenome; marine
119
47
-
Asn
GTT
[ENA]
¢þ
>WENV180273645
OBEU01003179
[OBEU] marine metagenome; marine
150
74
-
Glu
CTC
[ENA]
¢þ
>WENV180273617
OBEU01001377
[OBEU] marine metagenome; marine
162
234
+
His
GTG
[ENA]
¢þ
>WENV180273615
OBEU01001292
[OBEU] marine metagenome; marine
171
246
+
Lys
CTT
[ENA]
¢þ
>WENV180273639
OBEU01002282
[OBEU] marine metagenome; marine
205
281
+
fMet
CAT
[ENA]
¢þ
>WENV180273641
OBEU01002408
[OBEU] marine metagenome; marine
219
149
-
Gly
GCC
[ENA]
¢þ
>WENV180273623
OBEU01001440
[OBEU] marine metagenome; marine
225
297
+
Thr
TGT
[ENA]
¢þ
>WENV180273644
OBEU01003125
[OBEU] marine metagenome; marine
226
299
+
Lys
CTT
[ENA]
¢þ
>WENV180273613
OBEU01000820
[OBEU] marine metagenome; marine
227
155
-
Val
TAC
[ENA]
¢þ
>WENV180273618
OBEU01001377
[OBEU] marine metagenome; marine
238
308
+
Gly
TCC
[ENA]
¢þ
>WENV180273643
OBEU01002855
[OBEU] marine metagenome; marine
289
206
-
Ser
TGA
[ENA]
¢þ
>WENV180273633
OBEU01002024
[OBEU] marine metagenome; marine
395
466
+
Ala
GGC
[ENA]
¢þ
>WENV180273632
OBEU01002001
[OBEU] marine metagenome; marine
420
346
-
Arg
CCT
[ENA]
¢þ
>WENV180273619
OBEU01001377
[OBEU] marine metagenome; marine
435
509
+
Asn
GTT
[ENA]
¢þ
>WENV180273600
OBEU01000426
[OBEU] marine metagenome; marine
445
518
+
Val
GAC
[ENA]
¢þ
>WENV180273606
OBEU01000566
[OBEU] marine metagenome; marine
479
553
+
Val
CAC
[ENA]
¢þ
>WENV180273579
OBEU01000095
[OBEU] marine metagenome; marine
521
607
+
Ser
GCT
[ENA]
¢þ
>WENV180273635
OBEU01002186
[OBEU] marine metagenome; marine
529
616
+
Ser
GGA
[ENA]
¢þ
>WENV180273586
OBEU01000178
[OBEU] marine metagenome; marine
532
457
-
Arg
TCG
[ENA]
¢þ
>WENV180273642
OBEU01002761
[OBEU] marine metagenome; marine
562
476
-
Ser
TGA
[ENA]
¢þ
>WENV180273637
OBEU01002272
[OBEU] marine metagenome; marine
582
508
-
Tyr
GTA
[ENA]
¢þ
>WENV180273598
OBEU01000385
[OBEU] marine metagenome; marine
589
663
+
Thr
GGT
[ENA]
¢þ
>WENV180273610
OBEU01000738
[OBEU] marine metagenome; marine
605
679
+
His
GTG
[ENA]
¢þ
>WENV180273602
OBEU01000452
[OBEU] marine metagenome; marine
627
543
-
Leu
TAA
[ENA]
¢þ
>WENV180273634
OBEU01002111
[OBEU] marine metagenome; marine
634
563
-
Ala
GGC
[ENA]
¢þ
>WENV180273611
OBEU01000781
[OBEU] marine metagenome; marine
645
571
-
Thr
TGT
[ENA]
¢þ
>WENV180273620
OBEU01001377
[OBEU] marine metagenome; marine
653
725
+
Tyr
GTA
[ENA]
¢þ
>WENV180273583
OBEU01000130
[OBEU] marine metagenome; marine
689
619
-
Gly
CCC
[ENA]
¢þ
>WENV180273631
OBEU01001979
[OBEU] marine metagenome; marine
697
769
+
Ala
CGC
[ENA]
¢þ
>WENV180273622
OBEU01001427
[OBEU] marine metagenome; marine
699
625
-
fMet
CAT
[ENA]
¢þ
>WENV180273626
OBEU01001714
[OBEU] marine metagenome; marine
721
793
+
Gly
TCC
[ENA]
¢þ
>WENV180273628
OBEU01001800
[OBEU] marine metagenome; marine
723
650
-
Tyr
GTA
[ENA]
¢þ
>WENV180273560
OBEU01000005
[OBEU] marine metagenome; marine
725
798
+
Phe
GAA
[ENA]
¢þ
>WENV180273614
OBEU01001163
[OBEU] marine metagenome; marine
755
681
-
Ile
GAT
[ENA]
¢þ
>WENV180273616
OBEU01001373
[OBEU] marine metagenome; marine
760
688
-
Gln
CTG
[ENA]
¢þ
>WENV180273587
OBEU01000182
[OBEU] marine metagenome; marine
760
831
+
Pro
GGG
[ENA]
¢þ
>WENV180273608
OBEU01000685
[OBEU] marine metagenome; marine
760
834
+
Glu
TTC
[ENA]
¢þ
>WENV180273599
OBEU01000413
[OBEU] marine metagenome; marine
802
731
-
His
GTG
[ENA]
¢þ
>WENV180273627
OBEU01001799
[OBEU] marine metagenome; marine
841
915
+
His
GTG
[ENA]
¢þ
>WENV180273625
OBEU01001523
[OBEU] marine metagenome; marine
872
944
+
Val
TAC
[ENA]
¢þ
>WENV180273640
OBEU01002351
[OBEU] marine metagenome; marine
895
968
+
Arg
CCT
[ENA]
¢þ
>WENV180273630
OBEU01001881
[OBEU] marine metagenome; marine
902
826
-
Glu
CTC
[ENA]
¢þ
>WENV180273629
OBEU01001864
[OBEU] marine metagenome; marine
902
976
+
Asn
GTT
[ENA]
¢þ
>WENV180273601
OBEU01000442
[OBEU] marine metagenome; marine
943
867
-
Lys
TTT
[ENA]
¢þ
>WENV180273636
OBEU01002244
[OBEU] marine metagenome; marine
981
908
-
Pro
TGG
[ENA]
¢þ
>WENV180273607
OBEU01000674
[OBEU] marine metagenome; marine
1022
1111
+
Ser
CGA
[ENA]
¢þ
>WENV180273621
OBEU01001377
[OBEU] marine metagenome; marine
1057
1142
+
Met
CAT
[ENA]
¢þ
>WENV180273612
OBEU01000805
[OBEU] marine metagenome; marine
1137
1208
+
Ala
CGC
[ENA]
¢þ
>WENV180273624
OBEU01001521
[OBEU] marine metagenome; marine
1207
1281
+
Arg
TCT
[ENA]
¢þ
>WENV180273609
OBEU01000717
[OBEU] marine metagenome; marine
1243
1329
+
Ser
CGA
[ENA]
¢þ
>WENV180273597
OBEU01000330
[OBEU] marine metagenome; marine
1251
1176
-
Val
GAC
[ENA]
¢þ
>WENV180273584
OBEU01000136
[OBEU] marine metagenome; marine
1284
1211
-
Phe
GAA
[ENA]
¢þ
>WENV180273561
OBEU01000005
[OBEU] marine metagenome; marine
1309
1382
+
Arg
TCT
[ENA]
¢þ
>WENV180273585
OBEU01000153
[OBEU] marine metagenome; marine
1377
1307
-
Gly
TCC
[ENA]
¢þ
>WENV180273588
OBEU01000206
[OBEU] marine metagenome; marine
1380
1457
+
Ile2
CAT
[ENA]
¢þ
>WENV180273605
OBEU01000514
[OBEU] marine metagenome; marine
1395
1469
+
Ile
GAT
[ENA]
¢þ
>WENV180273592
OBEU01000233
[OBEU] marine metagenome; marine
1550
1477
-
Thr
CGT
[ENA]
¢þ
>WENV180273581
OBEU01000113
[OBEU] marine metagenome; marine
1592
1668
+
Arg
TCT
[ENA]
¢þ
>WENV180273604
OBEU01000486
[OBEU] marine metagenome; marine
1692
1765
+
Thr
CGT
[ENA]
¢þ
>WENV180273591
OBEU01000233
[OBEU] marine metagenome; marine
1749
1674
-
fMet
CAT
[ENA]
¢þ
>WENV180273595
OBEU01000275
[OBEU] marine metagenome; marine
1824
1907
+
Ser
TGA
[ENA]
¢þ
>WENV180273589
OBEU01000213
[OBEU] marine metagenome; marine
1834
1907
+
Lys
TTT
[ENA]
¢þ
>WENV180273596
OBEU01000316
[OBEU] marine metagenome; marine
1845
1928
+
Leu
TAG
[ENA]
¢þ
>WENV180273590
OBEU01000220
[OBEU] marine metagenome; marine
1928
1852
-
Val
TAC
[ENA]
¢þ
>WENV180273562
OBEU01000005
[OBEU] marine metagenome; marine
2236
2309
+
Ala
TGC
[ENA]
¢þ
>WENV180273593
OBEU01000258
[OBEU] marine metagenome; marine
2272
2344
+
Asn
GTT
[ENA]
¢þ
>WENV180273582
OBEU01000113
[OBEU] marine metagenome; marine
2273
2347
+
Asn
GTT
[ENA]
¢þ
>WENV180273594
OBEU01000260
[OBEU] marine metagenome; marine
2295
2215
-
Ser
GGA
[ENA]
¢þ
>WENV180273563
OBEU01000005
[OBEU] marine metagenome; marine
2313
2388
+
Ile2
CAT
[ENA]
¢þ
>WENV180273564
OBEU01000005
[OBEU] marine metagenome; marine
2396
2468
+
Thr
TGT
[ENA]
¢þ
>WENV180273577
OBEU01000069
[OBEU] marine metagenome; marine
2487
2415
-
Arg
GCG
[ENA]
¢þ
>WENV180273565
OBEU01000005
[OBEU] marine metagenome; marine
2491
2565
+
Gln
TTG
[ENA]
¢þ
>WENV180273573
OBEU01000018
[OBEU] marine metagenome; marine
2749
2820
+
Ala
TGC
[ENA]
¢þ
>WENV180273571
OBEU01000006
[OBEU] marine metagenome; marine
2957
2886
-
His
GTG
[ENA]
¢þ
>WENV180273580
OBEU01000095
[OBEU] marine metagenome; marine
3000
3085
+
Leu
CAG
[ENA]
¢þ
>WENV180273578
OBEU01000084
[OBEU] marine metagenome; marine
3353
3426
+
Thr
TGT
[ENA]
¢þ
>WENV180273566
OBEU01000005
[OBEU] marine metagenome; marine
3856
3943
+
Leu
GAG
[ENA]
¢þ
>WENV180273575
OBEU01000041
[OBEU] marine metagenome; marine
3956
4030
+
Lys
CTT
[ENA]
¢þ
>WENV180273567
OBEU01000005
[OBEU] marine metagenome; marine
4121
4208
+
Leu
CAA
[ENA]
¢þ
>WENV180273576
OBEU01000044
[OBEU] marine metagenome; marine
4366
4439
+
Ala
TGC
[ENA]
¢þ
>WENV180273568
OBEU01000005
[OBEU] marine metagenome; marine
5166
5239
+
Pro
TGG
[ENA]
¢þ
>WENV180273569
OBEU01000005
[OBEU] marine metagenome; marine
5317
5392
+
Val
TAC
[ENA]
¢þ
>WENV180273570
OBEU01000005
[OBEU] marine metagenome; marine
5506
5581
+
Ile
GAT
[ENA]
¢þ
>WENV180273574
OBEU01000018
[OBEU] marine metagenome; marine
6471
6546
+
Cys
GCA
[ENA]
¢þ
>WENV180273572
OBEU01000009
[OBEU] marine metagenome; marine
10817
10742
-
Pro
TGG
[ENA]
¢þ
>WENV180273558
OBEU01000004
[OBEU] marine metagenome; marine
19230
19304
+
Thr
TGT
[ENA]
¢þ
>WENV180273559
OBEU01000004
[OBEU] marine metagenome; marine
22099
22170
+
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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