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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OBGZ] soil metagenome; soil
HIT:
24 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180274486
OBGZ01006647
[OBGZ] soil metagenome; soil
36
111
+
Thr
CGT
[ENA]
¢þ
>WENV180274483
OBGZ01003795
[OBGZ] soil metagenome; soil
44
119
+
Phe
GAA
[ENA]
¢þ
>WENV180274472
OBGZ01000621
[OBGZ] soil metagenome; soil
51
135
+
Leu
CAA
[ENA]
¢þ
>WENV180274484
OBGZ01004137
[OBGZ] soil metagenome; soil
84
8
-
Met
CAT
[ENA]
¢þ
>WENV180274476
OBGZ01002742
[OBGZ] soil metagenome; soil
90
15
-
Ala
GGC
[ENA]
¢þ
>WENV180274473
OBGZ01001650
[OBGZ] soil metagenome; soil
96
21
-
Val
TAC
[ENA]
¢þ
>WENV180274479
OBGZ01003442
[OBGZ] soil metagenome; soil
110
202
+
Ser
GCT
[ENA]
¢þ
>WENV180274485
OBGZ01005138
[OBGZ] soil metagenome; soil
116
190
+
Arg
CCT
[ENA]
¢þ
>WENV180274481
OBGZ01003563
[OBGZ] soil metagenome; soil
152
65
-
Ser
TGA
[ENA]
¢þ
>WENV180274482
OBGZ01003772
[OBGZ] soil metagenome; soil
180
105
-
Glu
TTC
[ENA]
¢þ
>WENV180274480
OBGZ01003442
[OBGZ] soil metagenome; soil
206
282
+
Arg
ACG
[ENA]
¢þ
>WENV180274477
OBGZ01003044
[OBGZ] soil metagenome; soil
233
308
+
Thr
TGT
[ENA]
¢þ
>WENV180274478
OBGZ01003044
[OBGZ] soil metagenome; soil
317
401
+
Tyr
GTA
[ENA]
¢þ
>WENV180274474
OBGZ01002626
[OBGZ] soil metagenome; soil
336
247
-
Ser
CGA
[ENA]
¢þ
>WENV180274475
OBGZ01002708
[OBGZ] soil metagenome; soil
449
375
-
Sup
CTA
[ENA]
¢þ
>WENV180274465
OBGZ01000007
[OBGZ] soil metagenome; soil
599
523
-
Asp
GTC
[ENA]
¢þ
>WENV180274467
OBGZ01000120
[OBGZ] soil metagenome; soil
688
613
-
Ile2
CAT
[ENA]
¢þ
>WENV180274471
OBGZ01000454
[OBGZ] soil metagenome; soil
938
1014
+
Arg
TCT
[ENA]
¢þ
>WENV180274470
OBGZ01000184
[OBGZ] soil metagenome; soil
1065
989
-
Pro
TGG
[ENA]
¢þ
>WENV180274469
OBGZ01000184
[OBGZ] soil metagenome; soil
1194
1108
-
Leu
CAG
[ENA]
¢þ
>WENV180274468
OBGZ01000184
[OBGZ] soil metagenome; soil
1290
1215
-
His
GTG
[ENA]
¢þ
>WENV180274464
OBGZ01000007
[OBGZ] soil metagenome; soil
4026
3951
-
Ala
TGC
[ENA]
¢þ
>WENV180274463
OBGZ01000007
[OBGZ] soil metagenome; soil
4145
4069
-
Ile
GAT
[ENA]
¢þ
>WENV180274466
OBGZ01000009
[OBGZ] soil metagenome; soil
4613
4688
+
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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