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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[OCFP] soil metagenome; soil
HIT:
7 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180509686
OCFP01000032
[OCFP] soil metagenome; soil
107
182
+
Asn
GTT
[ENA]
¢þ
>WENV180509688
OCFP01000573
[OCFP] soil metagenome; soil
115
29
-
Leu
GAG
[ENA]
¢þ
>WENV180509691
OCFP01001149
[OCFP] soil metagenome; soil
127
51
-
Arg
ACG
[ENA]
¢þ
>WENV180509689
OCFP01000653
[OCFP] soil metagenome; soil
143
59
-
Leu
CAA
[ENA]
¢þ
>WENV180509690
OCFP01000732
[OCFP] soil metagenome; soil
179
103
-
Val
GAC
[ENA]
¢þ
>WENV180509692
OCFP01001187
[OCFP] soil metagenome; soil
193
118
-
Lys
TTT
[ENA]
¢þ
>WENV180509687
OCFP01000052
[OCFP] soil metagenome; soil
351
427
+
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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