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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OCFX] soil metagenome; soil
HIT:
23 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180509934
OCFX01000246
[OCFX] soil metagenome; soil
9
84
+
Ile
GAT
[ENA]
¢þ
>WENV180509933
OCFX01000236
[OCFX] soil metagenome; soil
14
100
+
Leu
GAG
[ENA]
¢þ
>WENV180509949
OCFX01003544
[OCFX] soil metagenome; soil
16
102
+
Leu
CAG
[ENA]
¢þ
>WENV180509945
OCFX01002263
[OCFX] soil metagenome; soil
18
94
+
Val
GAC
[ENA]
¢þ
>WENV180509937
OCFX01000577
[OCFX] soil metagenome; soil
21
96
+
Trp
CCA
[ENA]
¢þ
>WENV180509947
OCFX01003102
[OCFX] soil metagenome; soil
41
116
+
Asn
GTT
[ENA]
¢þ
>WENV180509950
OCFX01004181
[OCFX] soil metagenome; soil
69
144
+
Thr
TGT
[ENA]
¢þ
>WENV180509938
OCFX01000849
[OCFX] soil metagenome; soil
85
161
+
Pro
GGG
[ENA]
¢þ
>WENV180509942
OCFX01001773
[OCFX] soil metagenome; soil
113
27
-
Leu
TAA
[ENA]
¢þ
>WENV180509948
OCFX01003455
[OCFX] soil metagenome; soil
127
214
+
Ser
TGA
[ENA]
¢þ
>WENV180509935
OCFX01000246
[OCFX] soil metagenome; soil
139
213
+
Ala
TGC
[ENA]
¢þ
>WENV180509943
OCFX01002011
[OCFX] soil metagenome; soil
144
57
-
Ser
GGA
[ENA]
¢þ
>WENV180509946
OCFX01002779
[OCFX] soil metagenome; soil
150
234
+
Leu
CAA
[ENA]
¢þ
>WENV180509941
OCFX01001773
[OCFX] soil metagenome; soil
199
126
-
Cys
GCA
[ENA]
¢þ
>WENV180509928
OCFX01000011
[OCFX] soil metagenome; soil
203
278
+
Glu
TTC
[ENA]
¢þ
>WENV180509939
OCFX01000987
[OCFX] soil metagenome; soil
214
290
+
Asp
GTC
[ENA]
¢þ
>WENV180509940
OCFX01001388
[OCFX] soil metagenome; soil
236
312
+
Pro
CGG
[ENA]
¢þ
>WENV180509930
OCFX01000012
[OCFX] soil metagenome; soil
246
171
-
Ala
TGC
[ENA]
¢þ
>WENV180509944
OCFX01002042
[OCFX] soil metagenome; soil
258
183
-
Lys
TTT
[ENA]
¢þ
>WENV180509932
OCFX01000123
[OCFX] soil metagenome; soil
339
415
+
Arg
ACG
[ENA]
¢þ
>WENV180509936
OCFX01000574
[OCFX] soil metagenome; soil
354
429
+
Thr
CGT
[ENA]
¢þ
>WENV180509929
OCFX01000012
[OCFX] soil metagenome; soil
365
289
-
Ile
GAT
[ENA]
¢þ
>WENV180509931
OCFX01000036
[OCFX] soil metagenome; soil
694
618
-
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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