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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OCGH] soil metagenome; soil
HIT:
73 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180510220
OCGH01000187
[OCGH] soil metagenome; soil
1
76
+
Lys
TTT
[ENA]
¢þ
>WENV180510221
OCGH01000193
[OCGH] soil metagenome; soil
78
3
-
Gly
GCC
[ENA]
¢þ
>WENV180510160
OCGH01000007
[OCGH] soil metagenome; soil
86
10
-
Arg
ACG
[ENA]
¢þ
>WENV180510178
OCGH01000017
[OCGH] soil metagenome; soil
112
188
+
Asp
GTC
[ENA]
¢þ
>WENV180510217
OCGH01000108
[OCGH] soil metagenome; soil
127
202
+
Glu
TTC
[ENA]
¢þ
>WENV180510219
OCGH01000122
[OCGH] soil metagenome; soil
186
111
-
Ala
TGC
[ENA]
¢þ
>WENV180510179
OCGH01000017
[OCGH] soil metagenome; soil
197
272
+
Trp
CCA
[ENA]
¢þ
>WENV180510216
OCGH01000104
[OCGH] soil metagenome; soil
213
288
+
Glu
TTC
[ENA]
¢þ
>WENV180510218
OCGH01000122
[OCGH] soil metagenome; soil
305
229
-
Ile
GAT
[ENA]
¢þ
>WENV180510159
OCGH01000007
[OCGH] soil metagenome; soil
362
286
-
Arg
ACG
[ENA]
¢þ
>WENV180510215
OCGH01000068
[OCGH] soil metagenome; soil
381
306
-
Thr
GGT
[ENA]
¢þ
>WENV180510158
OCGH01000007
[OCGH] soil metagenome; soil
458
366
-
Ser
GCT
[ENA]
¢þ
>WENV180510214
OCGH01000068
[OCGH] soil metagenome; soil
461
387
-
Gly
TCC
[ENA]
¢þ
>WENV180510213
OCGH01000068
[OCGH] soil metagenome; soil
662
578
-
Tyr
GTA
[ENA]
¢þ
>WENV180510212
OCGH01000068
[OCGH] soil metagenome; soil
746
671
-
Thr
TGT
[ENA]
¢þ
>WENV180510202
OCGH01000038
[OCGH] soil metagenome; soil
1161
1085
-
Arg
TCT
[ENA]
¢þ
>WENV180510207
OCGH01000060
[OCGH] soil metagenome; soil
2222
2146
-
Asp
GTC
[ENA]
¢þ
>WENV180510211
OCGH01000067
[OCGH] soil metagenome; soil
2554
2479
-
Ala
GGC
[ENA]
¢þ
>WENV180510210
OCGH01000067
[OCGH] soil metagenome; soil
2669
2594
-
Ala
GGC
[ENA]
¢þ
>WENV180510205
OCGH01000059
[OCGH] soil metagenome; soil
3292
3367
+
Thr
CGT
[ENA]
¢þ
>WENV180510169
OCGH01000009
[OCGH] soil metagenome; soil
3971
3896
-
Asn
GTT
[ENA]
¢þ
>WENV180510208
OCGH01000067
[OCGH] soil metagenome; soil
5369
5444
+
Val
TAC
[ENA]
¢þ
>WENV180510209
OCGH01000067
[OCGH] soil metagenome; soil
5491
5566
+
Val
TAC
[ENA]
¢þ
>WENV180510168
OCGH01000009
[OCGH] soil metagenome; soil
6380
6305
-
Asn
GTT
[ENA]
¢þ
>WENV180510201
OCGH01000035
[OCGH] soil metagenome; soil
7510
7436
-
Sup
CTA
[ENA]
¢þ
>WENV180510200
OCGH01000035
[OCGH] soil metagenome; soil
7622
7548
-
Gln
CTG
[ENA]
¢þ
>WENV180510199
OCGH01000035
[OCGH] soil metagenome; soil
7746
7670
-
Met
CAT
[ENA]
¢þ
>WENV180510198
OCGH01000035
[OCGH] soil metagenome; soil
7836
7762
-
Gln
TTG
[ENA]
¢þ
>WENV180510197
OCGH01000035
[OCGH] soil metagenome; soil
7945
7871
-
Gln
TTG
[ENA]
¢þ
>WENV180510196
OCGH01000035
[OCGH] soil metagenome; soil
8053
7969
-
Leu
TAG
[ENA]
¢þ
>WENV180510162
OCGH01000009
[OCGH] soil metagenome; soil
8129
8204
+
Asn
GTT
[ENA]
¢þ
>WENV180510195
OCGH01000035
[OCGH] soil metagenome; soil
8139
8063
-
Met
CAT
[ENA]
¢þ
>WENV180510206
OCGH01000060
[OCGH] soil metagenome; soil
10225
10149
-
Asp
GTC
[ENA]
¢þ
>WENV180510171
OCGH01000010
[OCGH] soil metagenome; soil
10780
10693
-
Ser
GGA
[ENA]
¢þ
>WENV180510187
OCGH01000030
[OCGH] soil metagenome; soil
11995
12071
+
Pro
CGG
[ENA]
¢þ
>WENV180510204
OCGH01000040
[OCGH] soil metagenome; soil
16527
16443
-
Tyr
GTA
[ENA]
¢þ
>WENV180510203
OCGH01000040
[OCGH] soil metagenome; soil
16821
16737
-
Tyr
GTA
[ENA]
¢þ
>WENV180510173
OCGH01000012
[OCGH] soil metagenome; soil
19851
19776
-
Phe
GAA
[ENA]
¢þ
>WENV180510167
OCGH01000009
[OCGH] soil metagenome; soil
21682
21607
-
Asn
GTT
[ENA]
¢þ
>WENV180510163
OCGH01000009
[OCGH] soil metagenome; soil
22674
22763
+
Ser
CGA
[ENA]
¢þ
>WENV180510153
OCGH01000006
[OCGH] soil metagenome; soil
28226
28301
+
Ile2
CAT
[ENA]
¢þ
>WENV180510152
OCGH01000005
[OCGH] soil metagenome; soil
29789
29864
+
Phe
GAA
[ENA]
¢þ
>WENV180510180
OCGH01000017
[OCGH] soil metagenome; soil
35615
35691
+
Arg
CCG
[ENA]
¢þ
>WENV180510181
OCGH01000017
[OCGH] soil metagenome; soil
35750
35825
+
His
GTG
[ENA]
¢þ
>WENV180510182
OCGH01000017
[OCGH] soil metagenome; soil
35846
35932
+
Leu
CAG
[ENA]
¢þ
>WENV180510183
OCGH01000017
[OCGH] soil metagenome; soil
35975
36051
+
Pro
TGG
[ENA]
¢þ
>WENV180510189
OCGH01000032
[OCGH] soil metagenome; soil
41913
41988
+
Lys
TTT
[ENA]
¢þ
>WENV180510190
OCGH01000032
[OCGH] soil metagenome; soil
42124
42199
+
Val
TAC
[ENA]
¢þ
>WENV180510191
OCGH01000032
[OCGH] soil metagenome; soil
42204
42279
+
Lys
TTT
[ENA]
¢þ
>WENV180510192
OCGH01000032
[OCGH] soil metagenome; soil
42429
42504
+
Val
TAC
[ENA]
¢þ
>WENV180510193
OCGH01000032
[OCGH] soil metagenome; soil
42509
42584
+
Lys
TTT
[ENA]
¢þ
>WENV180510194
OCGH01000032
[OCGH] soil metagenome; soil
42731
42806
+
Lys
TTT
[ENA]
¢þ
>WENV180510188
OCGH01000031
[OCGH] soil metagenome; soil
48388
48464
+
Pro
GGG
[ENA]
¢þ
>WENV180510184
OCGH01000018
[OCGH] soil metagenome; soil
54407
54332
-
Ile2
CAT
[ENA]
¢þ
>WENV180510186
OCGH01000026
[OCGH] soil metagenome; soil
56956
56881
-
Thr
GGT
[ENA]
¢þ
>WENV180510185
OCGH01000023
[OCGH] soil metagenome; soil
61832
61916
+
Leu
CAA
[ENA]
¢þ
>WENV180510176
OCGH01000014
[OCGH] soil metagenome; soil
64179
64093
-
Leu
CAG
[ENA]
¢þ
>WENV180510175
OCGH01000014
[OCGH] soil metagenome; soil
64300
64214
-
Leu
CAG
[ENA]
¢þ
>WENV180510174
OCGH01000014
[OCGH] soil metagenome; soil
64415
64329
-
Leu
CAG
[ENA]
¢þ
>WENV180510164
OCGH01000009
[OCGH] soil metagenome; soil
74114
74189
+
Gly
GCC
[ENA]
¢þ
>WENV180510165
OCGH01000009
[OCGH] soil metagenome; soil
74244
74317
+
Cys
GCA
[ENA]
¢þ
>WENV180510166
OCGH01000009
[OCGH] soil metagenome; soil
74330
74416
+
Leu
TAA
[ENA]
¢þ
>WENV180510149
OCGH01000001
[OCGH] soil metagenome; soil
94942
95018
+
Val
GAC
[ENA]
¢þ
>WENV180510150
OCGH01000001
[OCGH] soil metagenome; soil
95023
95099
+
Val
GAC
[ENA]
¢þ
>WENV180510177
OCGH01000016
[OCGH] soil metagenome; soil
102275
102362
+
Ser
GGA
[ENA]
¢þ
>WENV180510161
OCGH01000008
[OCGH] soil metagenome; soil
105280
105186
-
SeC
TCA
[ENA]
¢þ
>WENV180510170
OCGH01000010
[OCGH] soil metagenome; soil
116521
116434
-
Ser
TGA
[ENA]
¢þ
>WENV180510156
OCGH01000007
[OCGH] soil metagenome; soil
129139
129215
+
fMet
CAT
[ENA]
¢þ
>WENV180510157
OCGH01000007
[OCGH] soil metagenome; soil
129249
129325
+
fMet
CAT
[ENA]
¢þ
>WENV180510155
OCGH01000006
[OCGH] soil metagenome; soil
131030
130954
-
fMet
CAT
[ENA]
¢þ
>WENV180510172
OCGH01000012
[OCGH] soil metagenome; soil
131160
131233
+
Gly
CCC
[ENA]
¢þ
>WENV180510154
OCGH01000006
[OCGH] soil metagenome; soil
134899
134813
-
Leu
GAG
[ENA]
¢þ
>WENV180510151
OCGH01000002
[OCGH] soil metagenome; soil
175912
175986
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK