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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OCGJ] soil metagenome; soil
HIT:
8 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180510227
OCGJ01001572
[OCGJ] soil metagenome; soil
49
124
+
Ile2
CAT
[ENA]
¢þ
>WENV180510222
OCGJ01000024
[OCGJ] soil metagenome; soil
89
13
-
Ile
GAT
[ENA]
¢þ
>WENV180510225
OCGJ01000869
[OCGJ] soil metagenome; soil
101
174
+
Gly
CCC
[ENA]
¢þ
>WENV180510226
OCGJ01001533
[OCGJ] soil metagenome; soil
146
221
+
Glu
TTC
[ENA]
¢þ
>WENV180510228
OCGJ01002077
[OCGJ] soil metagenome; soil
173
248
+
Phe
GAA
[ENA]
¢þ
>WENV180510229
OCGJ01002610
[OCGJ] soil metagenome; soil
241
157
-
Tyr
GTA
[ENA]
¢þ
>WENV180510224
OCGJ01000117
[OCGJ] soil metagenome; soil
389
464
+
Ala
GGC
[ENA]
¢þ
>WENV180510223
OCGJ01000071
[OCGJ] soil metagenome; soil
558
633
+
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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