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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OCGK] soil metagenome; soil
HIT:
12 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180510241
OCGK01003144
[OCGK] soil metagenome; soil
28
103
+
Lys
TTT
[ENA]
¢þ
>WENV180510230
OCGK01000003
[OCGK] soil metagenome; soil
87
162
+
Glu
TTC
[ENA]
¢þ
>WENV180510239
OCGK01002180
[OCGK] soil metagenome; soil
117
41
-
fMet
CAT
[ENA]
¢þ
>WENV180510240
OCGK01002734
[OCGK] soil metagenome; soil
131
207
+
Met
CAT
[ENA]
¢þ
>WENV180510235
OCGK01001175
[OCGK] soil metagenome; soil
131
225
+
SeC
TCA
[ENA]
¢þ
>WENV180510234
OCGK01001045
[OCGK] soil metagenome; soil
160
73
-
Ser
TGA
[ENA]
¢þ
>WENV180510233
OCGK01000004
[OCGK] soil metagenome; soil
186
111
-
Ala
TGC
[ENA]
¢þ
>WENV180510238
OCGK01001522
[OCGK] soil metagenome; soil
196
271
+
Asn
GTT
[ENA]
¢þ
>WENV180510236
OCGK01001438
[OCGK] soil metagenome; soil
268
192
-
Pro
GGG
[ENA]
¢þ
>WENV180510237
OCGK01001443
[OCGK] soil metagenome; soil
284
211
-
Gly
CCC
[ENA]
¢þ
>WENV180510232
OCGK01000004
[OCGK] soil metagenome; soil
305
229
-
Ile
GAT
[ENA]
¢þ
>WENV180510231
OCGK01000003
[OCGK] soil metagenome; soil
3523
3599
+
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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