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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OCGM] soil metagenome; soil
HIT:
69 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180510318
OCGM01000288
[OCGM] soil metagenome; soil
78
3
-
Gly
GCC
[ENA]
¢þ
>WENV180510305
OCGM01000071
[OCGM] soil metagenome; soil
112
188
+
Asp
GTC
[ENA]
¢þ
>WENV180510304
OCGM01000067
[OCGM] soil metagenome; soil
162
76
-
Leu
CAG
[ENA]
¢þ
>WENV180510315
OCGM01000126
[OCGM] soil metagenome; soil
192
117
-
Ala
TGC
[ENA]
¢þ
>WENV180510306
OCGM01000071
[OCGM] soil metagenome; soil
197
272
+
Trp
CCA
[ENA]
¢þ
>WENV180510316
OCGM01000127
[OCGM] soil metagenome; soil
202
127
-
Glu
TTC
[ENA]
¢þ
>WENV180510317
OCGM01000202
[OCGM] soil metagenome; soil
268
193
-
Lys
TTT
[ENA]
¢þ
>WENV180510303
OCGM01000067
[OCGM] soil metagenome; soil
277
191
-
Leu
CAG
[ENA]
¢þ
>WENV180510314
OCGM01000126
[OCGM] soil metagenome; soil
311
235
-
Ile
GAT
[ENA]
¢þ
>WENV180510313
OCGM01000077
[OCGM] soil metagenome; soil
381
306
-
Thr
GGT
[ENA]
¢þ
>WENV180510312
OCGM01000077
[OCGM] soil metagenome; soil
461
387
-
Gly
TCC
[ENA]
¢þ
>WENV180510311
OCGM01000077
[OCGM] soil metagenome; soil
662
578
-
Tyr
GTA
[ENA]
¢þ
>WENV180510310
OCGM01000077
[OCGM] soil metagenome; soil
746
671
-
Thr
TGT
[ENA]
¢þ
>WENV180510298
OCGM01000038
[OCGM] soil metagenome; soil
1178
1102
-
Arg
TCT
[ENA]
¢þ
>WENV180510309
OCGM01000075
[OCGM] soil metagenome; soil
1352
1277
-
Thr
CGT
[ENA]
¢þ
>WENV180510277
OCGM01000016
[OCGM] soil metagenome; soil
1843
1756
-
Ser
GGA
[ENA]
¢þ
>WENV180510302
OCGM01000061
[OCGM] soil metagenome; soil
2222
2146
-
Asp
GTC
[ENA]
¢þ
>WENV180510308
OCGM01000074
[OCGM] soil metagenome; soil
2554
2479
-
Ala
GGC
[ENA]
¢þ
>WENV180510307
OCGM01000074
[OCGM] soil metagenome; soil
2669
2594
-
Ala
GGC
[ENA]
¢þ
>WENV180510272
OCGM01000009
[OCGM] soil metagenome; soil
3971
3896
-
Asn
GTT
[ENA]
¢þ
>WENV180510271
OCGM01000009
[OCGM] soil metagenome; soil
6380
6305
-
Asn
GTT
[ENA]
¢þ
>WENV180510296
OCGM01000035
[OCGM] soil metagenome; soil
7508
7434
-
Sup
CTA
[ENA]
¢þ
>WENV180510295
OCGM01000035
[OCGM] soil metagenome; soil
7620
7546
-
Gln
CTG
[ENA]
¢þ
>WENV180510294
OCGM01000035
[OCGM] soil metagenome; soil
7744
7668
-
Met
CAT
[ENA]
¢þ
>WENV180510293
OCGM01000035
[OCGM] soil metagenome; soil
7834
7760
-
Gln
TTG
[ENA]
¢þ
>WENV180510292
OCGM01000035
[OCGM] soil metagenome; soil
7943
7869
-
Gln
TTG
[ENA]
¢þ
>WENV180510291
OCGM01000035
[OCGM] soil metagenome; soil
8051
7967
-
Leu
TAG
[ENA]
¢þ
>WENV180510265
OCGM01000009
[OCGM] soil metagenome; soil
8129
8204
+
Asn
GTT
[ENA]
¢þ
>WENV180510290
OCGM01000035
[OCGM] soil metagenome; soil
8137
8061
-
Met
CAT
[ENA]
¢þ
>WENV180510301
OCGM01000061
[OCGM] soil metagenome; soil
10225
10149
-
Asp
GTC
[ENA]
¢þ
>WENV180510274
OCGM01000010
[OCGM] soil metagenome; soil
10780
10693
-
Ser
GGA
[ENA]
¢þ
>WENV180510300
OCGM01000040
[OCGM] soil metagenome; soil
16711
16627
-
Tyr
GTA
[ENA]
¢þ
>WENV180510299
OCGM01000040
[OCGM] soil metagenome; soil
17005
16921
-
Tyr
GTA
[ENA]
¢þ
>WENV180510276
OCGM01000012
[OCGM] soil metagenome; soil
19832
19757
-
Phe
GAA
[ENA]
¢þ
>WENV180510270
OCGM01000009
[OCGM] soil metagenome; soil
21682
21607
-
Asn
GTT
[ENA]
¢þ
>WENV180510266
OCGM01000009
[OCGM] soil metagenome; soil
22674
22763
+
Ser
CGA
[ENA]
¢þ
>WENV180510261
OCGM01000007
[OCGM] soil metagenome; soil
28226
28301
+
Ile2
CAT
[ENA]
¢þ
>WENV180510260
OCGM01000006
[OCGM] soil metagenome; soil
29789
29864
+
Phe
GAA
[ENA]
¢þ
>WENV180510297
OCGM01000037
[OCGM] soil metagenome; soil
36566
36642
+
Pro
GGG
[ENA]
¢þ
>WENV180510285
OCGM01000027
[OCGM] soil metagenome; soil
41311
41235
-
Pro
CGG
[ENA]
¢þ
>WENV180510286
OCGM01000030
[OCGM] soil metagenome; soil
41913
41988
+
Lys
TTT
[ENA]
¢þ
>WENV180510287
OCGM01000030
[OCGM] soil metagenome; soil
42124
42199
+
Val
TAC
[ENA]
¢þ
>WENV180510288
OCGM01000030
[OCGM] soil metagenome; soil
42204
42279
+
Lys
TTT
[ENA]
¢þ
>WENV180510289
OCGM01000030
[OCGM] soil metagenome; soil
42426
42501
+
Lys
TTT
[ENA]
¢þ
>WENV180510258
OCGM01000002
[OCGM] soil metagenome; soil
48809
48733
-
fMet
CAT
[ENA]
¢þ
>WENV180510281
OCGM01000018
[OCGM] soil metagenome; soil
52522
52446
-
Pro
TGG
[ENA]
¢þ
>WENV180510280
OCGM01000018
[OCGM] soil metagenome; soil
52651
52565
-
Leu
CAG
[ENA]
¢þ
>WENV180510279
OCGM01000018
[OCGM] soil metagenome; soil
52747
52672
-
His
GTG
[ENA]
¢þ
>WENV180510278
OCGM01000018
[OCGM] soil metagenome; soil
52882
52806
-
Arg
CCG
[ENA]
¢þ
>WENV180510283
OCGM01000023
[OCGM] soil metagenome; soil
56171
56255
+
Leu
CAA
[ENA]
¢þ
>WENV180510284
OCGM01000025
[OCGM] soil metagenome; soil
56957
56882
-
Thr
GGT
[ENA]
¢þ
>WENV180510282
OCGM01000022
[OCGM] soil metagenome; soil
64179
64093
-
Leu
CAG
[ENA]
¢þ
>WENV180510264
OCGM01000008
[OCGM] soil metagenome; soil
68703
68797
+
SeC
TCA
[ENA]
¢þ
>WENV180510267
OCGM01000009
[OCGM] soil metagenome; soil
74114
74189
+
Gly
GCC
[ENA]
¢þ
>WENV180510268
OCGM01000009
[OCGM] soil metagenome; soil
74244
74317
+
Cys
GCA
[ENA]
¢þ
>WENV180510269
OCGM01000009
[OCGM] soil metagenome; soil
74330
74416
+
Leu
TAA
[ENA]
¢þ
>WENV180510250
OCGM01000001
[OCGM] soil metagenome; soil
94942
95018
+
Val
GAC
[ENA]
¢þ
>WENV180510251
OCGM01000001
[OCGM] soil metagenome; soil
95023
95099
+
Val
GAC
[ENA]
¢þ
>WENV180510273
OCGM01000010
[OCGM] soil metagenome; soil
116521
116434
-
Ser
TGA
[ENA]
¢þ
>WENV180510263
OCGM01000007
[OCGM] soil metagenome; soil
130804
130728
-
fMet
CAT
[ENA]
¢þ
>WENV180510275
OCGM01000012
[OCGM] soil metagenome; soil
131141
131214
+
Gly
CCC
[ENA]
¢þ
>WENV180510262
OCGM01000007
[OCGM] soil metagenome; soil
134673
134587
-
Leu
GAG
[ENA]
¢þ
>WENV180510259
OCGM01000005
[OCGM] soil metagenome; soil
175912
175986
+
Arg
CCT
[ENA]
¢þ
>WENV180510252
OCGM01000002
[OCGM] soil metagenome; soil
177490
177582
+
Ser
GCT
[ENA]
¢þ
>WENV180510253
OCGM01000002
[OCGM] soil metagenome; soil
177586
177662
+
Arg
ACG
[ENA]
¢þ
>WENV180510254
OCGM01000002
[OCGM] soil metagenome; soil
177862
177938
+
Arg
ACG
[ENA]
¢þ
>WENV180510255
OCGM01000002
[OCGM] soil metagenome; soil
178001
178077
+
Arg
ACG
[ENA]
¢þ
>WENV180510256
OCGM01000002
[OCGM] soil metagenome; soil
178277
178353
+
Arg
ACG
[ENA]
¢þ
>WENV180510257
OCGM01000002
[OCGM] soil metagenome; soil
210299
210374
+
Ile2
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK