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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OCGN] soil metagenome; soil
HIT:
12 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180510327
OCGN01001552
[OCGN] soil metagenome; soil
1
77
+
Pro
GGG
[ENA]
¢þ
>WENV180510330
OCGN01003000
[OCGN] soil metagenome; soil
73
147
+
Gln
TTG
[ENA]
¢þ
>WENV180510321
OCGN01000008
[OCGN] soil metagenome; soil
149
74
-
Thr
GGT
[ENA]
¢þ
>WENV180510326
OCGN01001468
[OCGN] soil metagenome; soil
157
82
-
Lys
TTT
[ENA]
¢þ
>WENV180510328
OCGN01001709
[OCGN] soil metagenome; soil
174
99
-
Ile2
CAT
[ENA]
¢þ
>WENV180510329
OCGN01002318
[OCGN] soil metagenome; soil
204
131
-
Gly
CCC
[ENA]
¢þ
>WENV180510325
OCGN01001468
[OCGN] soil metagenome; soil
235
160
-
Val
TAC
[ENA]
¢þ
>WENV180510323
OCGN01000284
[OCGN] soil metagenome; soil
338
262
-
Arg
ACG
[ENA]
¢þ
>WENV180510322
OCGN01000242
[OCGN] soil metagenome; soil
357
271
-
Leu
GAG
[ENA]
¢þ
>WENV180510324
OCGN01000605
[OCGN] soil metagenome; soil
372
288
-
Leu
CAA
[ENA]
¢þ
>WENV180510320
OCGN01000008
[OCGN] soil metagenome; soil
3546
3471
-
Glu
TTC
[ENA]
¢þ
>WENV180510319
OCGN01000001
[OCGN] soil metagenome; soil
10305
10380
+
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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