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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OCGS] soil metagenome; soil
HIT:
68 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180510613
OCGS01000118
[OCGS] soil metagenome; soil
1
76
+
Lys
TTT
[ENA]
¢þ
>WENV180510581
OCGS01000018
[OCGS] soil metagenome; soil
63
138
+
Trp
CCA
[ENA]
¢þ
>WENV180510616
OCGS01000190
[OCGS] soil metagenome; soil
78
2
-
Asp
GTC
[ENA]
¢þ
>WENV180510612
OCGS01000115
[OCGS] soil metagenome; soil
186
111
-
Ala
TGC
[ENA]
¢þ
>WENV180510607
OCGS01000095
[OCGS] soil metagenome; soil
194
269
+
Val
TAC
[ENA]
¢þ
>WENV180510614
OCGS01000118
[OCGS] soil metagenome; soil
212
287
+
Val
TAC
[ENA]
¢þ
>WENV180510615
OCGS01000146
[OCGS] soil metagenome; soil
268
193
-
Lys
TTT
[ENA]
¢þ
>WENV180510608
OCGS01000095
[OCGS] soil metagenome; soil
274
349
+
Lys
TTT
[ENA]
¢þ
>WENV180510610
OCGS01000101
[OCGS] soil metagenome; soil
304
229
-
Glu
TTC
[ENA]
¢þ
>WENV180510611
OCGS01000115
[OCGS] soil metagenome; soil
305
229
-
Ile
GAT
[ENA]
¢þ
>WENV180510606
OCGS01000069
[OCGS] soil metagenome; soil
381
306
-
Thr
GGT
[ENA]
¢þ
>WENV180510605
OCGS01000069
[OCGS] soil metagenome; soil
461
387
-
Gly
TCC
[ENA]
¢þ
>WENV180510609
OCGS01000095
[OCGS] soil metagenome; soil
496
571
+
Lys
TTT
[ENA]
¢þ
>WENV180510604
OCGS01000069
[OCGS] soil metagenome; soil
662
578
-
Tyr
GTA
[ENA]
¢þ
>WENV180510603
OCGS01000069
[OCGS] soil metagenome; soil
746
671
-
Thr
TGT
[ENA]
¢þ
>WENV180510602
OCGS01000068
[OCGS] soil metagenome; soil
2554
2479
-
Ala
GGC
[ENA]
¢þ
>WENV180510601
OCGS01000068
[OCGS] soil metagenome; soil
2669
2594
-
Ala
GGC
[ENA]
¢þ
>WENV180510598
OCGS01000059
[OCGS] soil metagenome; soil
3292
3367
+
Thr
CGT
[ENA]
¢þ
>WENV180510569
OCGS01000008
[OCGS] soil metagenome; soil
3971
3896
-
Asn
GTT
[ENA]
¢þ
>WENV180510600
OCGS01000068
[OCGS] soil metagenome; soil
5369
5444
+
Val
TAC
[ENA]
¢þ
>WENV180510568
OCGS01000008
[OCGS] soil metagenome; soil
6380
6305
-
Asn
GTT
[ENA]
¢þ
>WENV180510595
OCGS01000035
[OCGS] soil metagenome; soil
7510
7436
-
Sup
CTA
[ENA]
¢þ
>WENV180510594
OCGS01000035
[OCGS] soil metagenome; soil
7622
7548
-
Gln
CTG
[ENA]
¢þ
>WENV180510593
OCGS01000035
[OCGS] soil metagenome; soil
7746
7670
-
Met
CAT
[ENA]
¢þ
>WENV180510592
OCGS01000035
[OCGS] soil metagenome; soil
7836
7762
-
Gln
TTG
[ENA]
¢þ
>WENV180510591
OCGS01000035
[OCGS] soil metagenome; soil
7945
7871
-
Gln
TTG
[ENA]
¢þ
>WENV180510599
OCGS01000060
[OCGS] soil metagenome; soil
7981
8057
+
Asp
GTC
[ENA]
¢þ
>WENV180510590
OCGS01000035
[OCGS] soil metagenome; soil
8053
7969
-
Leu
TAG
[ENA]
¢þ
>WENV180510562
OCGS01000008
[OCGS] soil metagenome; soil
8129
8204
+
Asn
GTT
[ENA]
¢þ
>WENV180510589
OCGS01000035
[OCGS] soil metagenome; soil
8139
8063
-
Met
CAT
[ENA]
¢þ
>WENV180510587
OCGS01000029
[OCGS] soil metagenome; soil
11995
12071
+
Pro
CGG
[ENA]
¢þ
>WENV180510597
OCGS01000037
[OCGS] soil metagenome; soil
16711
16627
-
Tyr
GTA
[ENA]
¢þ
>WENV180510596
OCGS01000037
[OCGS] soil metagenome; soil
17005
16921
-
Tyr
GTA
[ENA]
¢þ
>WENV180510573
OCGS01000010
[OCGS] soil metagenome; soil
18171
18258
+
Ser
TGA
[ENA]
¢þ
>WENV180510576
OCGS01000012
[OCGS] soil metagenome; soil
19851
19776
-
Phe
GAA
[ENA]
¢þ
>WENV180510567
OCGS01000008
[OCGS] soil metagenome; soil
21682
21607
-
Asn
GTT
[ENA]
¢þ
>WENV180510563
OCGS01000008
[OCGS] soil metagenome; soil
22674
22763
+
Ser
CGA
[ENA]
¢þ
>WENV180510570
OCGS01000009
[OCGS] soil metagenome; soil
28226
28301
+
Ile2
CAT
[ENA]
¢þ
>WENV180510582
OCGS01000018
[OCGS] soil metagenome; soil
35481
35557
+
Arg
CCG
[ENA]
¢þ
>WENV180510583
OCGS01000018
[OCGS] soil metagenome; soil
35616
35691
+
His
GTG
[ENA]
¢þ
>WENV180510584
OCGS01000018
[OCGS] soil metagenome; soil
35712
35798
+
Leu
CAG
[ENA]
¢þ
>WENV180510585
OCGS01000018
[OCGS] soil metagenome; soil
35841
35917
+
Pro
TGG
[ENA]
¢þ
>WENV180510559
OCGS01000004
[OCGS] soil metagenome; soil
38182
38107
-
Gly
GCC
[ENA]
¢þ
>WENV180510558
OCGS01000004
[OCGS] soil metagenome; soil
38293
38218
-
Gly
GCC
[ENA]
¢þ
>WENV180510556
OCGS01000003
[OCGS] soil metagenome; soil
48019
47945
-
Arg
CCT
[ENA]
¢þ
>WENV180510588
OCGS01000030
[OCGS] soil metagenome; soil
48388
48464
+
Pro
GGG
[ENA]
¢þ
>WENV180510577
OCGS01000013
[OCGS] soil metagenome; soil
50693
50779
+
Leu
CAG
[ENA]
¢þ
>WENV180510578
OCGS01000013
[OCGS] soil metagenome; soil
50808
50894
+
Leu
CAG
[ENA]
¢þ
>WENV180510579
OCGS01000013
[OCGS] soil metagenome; soil
50929
51015
+
Leu
CAG
[ENA]
¢þ
>WENV180510553
OCGS01000001
[OCGS] soil metagenome; soil
54407
54332
-
Ile2
CAT
[ENA]
¢þ
>WENV180510586
OCGS01000023
[OCGS] soil metagenome; soil
61832
61916
+
Leu
CAA
[ENA]
¢þ
>WENV180510557
OCGS01000004
[OCGS] soil metagenome; soil
68027
68102
+
Phe
GAA
[ENA]
¢þ
>WENV180510560
OCGS01000006
[OCGS] soil metagenome; soil
68703
68797
+
SeC
TCA
[ENA]
¢þ
>WENV180510564
OCGS01000008
[OCGS] soil metagenome; soil
74114
74189
+
Gly
GCC
[ENA]
¢þ
>WENV180510565
OCGS01000008
[OCGS] soil metagenome; soil
74244
74317
+
Cys
GCA
[ENA]
¢þ
>WENV180510566
OCGS01000008
[OCGS] soil metagenome; soil
74330
74416
+
Leu
TAA
[ENA]
¢þ
>WENV180510552
OCGS01000001
[OCGS] soil metagenome; soil
86429
86353
-
Arg
ACG
[ENA]
¢þ
>WENV180510551
OCGS01000001
[OCGS] soil metagenome; soil
86704
86628
-
Arg
ACG
[ENA]
¢þ
>WENV180510550
OCGS01000001
[OCGS] soil metagenome; soil
86800
86708
-
Ser
GCT
[ENA]
¢þ
>WENV180510554
OCGS01000002
[OCGS] soil metagenome; soil
94942
95018
+
Val
GAC
[ENA]
¢þ
>WENV180510555
OCGS01000002
[OCGS] soil metagenome; soil
95023
95099
+
Val
GAC
[ENA]
¢þ
>WENV180510580
OCGS01000015
[OCGS] soil metagenome; soil
102275
102362
+
Ser
GGA
[ENA]
¢þ
>WENV180510574
OCGS01000010
[OCGS] soil metagenome; soil
123912
123999
+
Ser
GGA
[ENA]
¢þ
>WENV180510572
OCGS01000009
[OCGS] soil metagenome; soil
130691
130615
-
fMet
CAT
[ENA]
¢þ
>WENV180510575
OCGS01000012
[OCGS] soil metagenome; soil
131160
131233
+
Gly
CCC
[ENA]
¢þ
>WENV180510571
OCGS01000009
[OCGS] soil metagenome; soil
134560
134474
-
Leu
GAG
[ENA]
¢þ
>WENV180510561
OCGS01000007
[OCGS] soil metagenome; soil
171089
171165
+
Arg
TCT
[ENA]
¢þ
>WENV180510549
OCGS01000001
[OCGS] soil metagenome; soil
215481
215557
+
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK