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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OCGT] soil metagenome; soil
HIT:
9 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180510625
OCGT01002637
[OCGT] soil metagenome; soil
9
84
+
Thr
CGT
[ENA]
¢þ
>WENV180510623
OCGT01002005
[OCGT] soil metagenome; soil
112
186
+
Gly
TCC
[ENA]
¢þ
>WENV180510624
OCGT01002193
[OCGT] soil metagenome; soil
130
205
+
Asn
GTT
[ENA]
¢þ
>WENV180510618
OCGT01000014
[OCGT] soil metagenome; soil
140
65
-
Ala
TGC
[ENA]
¢þ
>WENV180510619
OCGT01000603
[OCGT] soil metagenome; soil
147
222
+
Glu
TTC
[ENA]
¢þ
>WENV180510622
OCGT01001939
[OCGT] soil metagenome; soil
149
65
-
Leu
TAG
[ENA]
¢þ
>WENV180510620
OCGT01001603
[OCGT] soil metagenome; soil
168
243
+
Val
TAC
[ENA]
¢þ
>WENV180510621
OCGT01001939
[OCGT] soil metagenome; soil
235
159
-
Met
CAT
[ENA]
¢þ
>WENV180510617
OCGT01000014
[OCGT] soil metagenome; soil
259
183
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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