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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OCLJ] human gut metagenome; human gut
HIT:
92 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180566518
OCLJ01023193
[OCLJ] human gut metagenome; human gut
1
84
+
Tyr
GTA
[ENA]
¢þ
>WENV180566514
OCLJ01023157
[OCLJ] human gut metagenome; human gut
2
72
+
Gly
TCC
[ENA]
¢þ
>WENV180566460
OCLJ01000013
[OCLJ] human gut metagenome; human gut
2
75
+
Lys
TTT
[ENA]
¢þ
>WENV180566512
OCLJ01022365
[OCLJ] human gut metagenome; human gut
4
77
+
Asp
GTC
[ENA]
¢þ
>WENV180566519
OCLJ01023495
[OCLJ] human gut metagenome; human gut
5
79
+
Val
TAC
[ENA]
¢þ
>WENV180566446
OCLJ01000004
[OCLJ] human gut metagenome; human gut
59
133
+
Lys
TTT
[ENA]
¢þ
>WENV180566433
OCLJ01000002
[OCLJ] human gut metagenome; human gut
64
139
+
Asp
GTC
[ENA]
¢þ
>WENV180566510
OCLJ01021139
[OCLJ] human gut metagenome; human gut
64
153
+
Ser
GCT
[ENA]
¢þ
>WENV180566520
OCLJ01023576
[OCLJ] human gut metagenome; human gut
72
1
-
Gln
TTG
[ENA]
¢þ
>WENV180566496
OCLJ01003889
[OCLJ] human gut metagenome; human gut
76
151
+
Met
CAT
[ENA]
¢þ
>WENV180566517
OCLJ01023169
[OCLJ] human gut metagenome; human gut
79
3
-
Ile
GAT
[ENA]
¢þ
>WENV180566516
OCLJ01023162
[OCLJ] human gut metagenome; human gut
84
157
+
His
GTG
[ENA]
¢þ
>WENV180566515
OCLJ01023157
[OCLJ] human gut metagenome; human gut
86
159
+
Ile
GAT
[ENA]
¢þ
>WENV180566504
OCLJ01009857
[OCLJ] human gut metagenome; human gut
96
179
+
Leu
CAA
[ENA]
¢þ
>WENV180566465
OCLJ01000032
[OCLJ] human gut metagenome; human gut
131
57
-
Asn
GTT
[ENA]
¢þ
>WENV180566513
OCLJ01022979
[OCLJ] human gut metagenome; human gut
141
59
-
Leu
TAG
[ENA]
¢þ
>WENV180566474
OCLJ01000042
[OCLJ] human gut metagenome; human gut
144
69
-
Asp
GTC
[ENA]
¢þ
>WENV180566447
OCLJ01000004
[OCLJ] human gut metagenome; human gut
148
231
+
Leu
TAG
[ENA]
¢þ
>WENV180566509
OCLJ01017167
[OCLJ] human gut metagenome; human gut
149
220
+
Glu
CTC
[ENA]
¢þ
>WENV180566511
OCLJ01021279
[OCLJ] human gut metagenome; human gut
158
85
-
Cys
GCA
[ENA]
¢þ
>WENV180566508
OCLJ01016858
[OCLJ] human gut metagenome; human gut
161
71
-
Ser
GGA
[ENA]
¢þ
>WENV180566505
OCLJ01011628
[OCLJ] human gut metagenome; human gut
163
91
-
Gly
TCC
[ENA]
¢þ
>WENV180566497
OCLJ01003889
[OCLJ] human gut metagenome; human gut
170
245
+
Ile2
CAT
[ENA]
¢þ
>WENV180566434
OCLJ01000002
[OCLJ] human gut metagenome; human gut
185
257
+
Phe
GAA
[ENA]
¢þ
>WENV180566506
OCLJ01013627
[OCLJ] human gut metagenome; human gut
192
118
-
Lys
TTT
[ENA]
¢þ
>WENV180566501
OCLJ01006502
[OCLJ] human gut metagenome; human gut
196
268
+
Arg
TCT
[ENA]
¢þ
>WENV180566502
OCLJ01006716
[OCLJ] human gut metagenome; human gut
214
288
+
Ala
TGC
[ENA]
¢þ
>WENV180566473
OCLJ01000042
[OCLJ] human gut metagenome; human gut
232
159
-
fMet
CAT
[ENA]
¢þ
>WENV180566448
OCLJ01000004
[OCLJ] human gut metagenome; human gut
237
312
+
Thr
TGT
[ENA]
¢þ
>WENV180566507
OCLJ01014564
[OCLJ] human gut metagenome; human gut
262
189
-
Met
CAT
[ENA]
¢þ
>WENV180566435
OCLJ01000002
[OCLJ] human gut metagenome; human gut
262
344
+
Tyr
GTA
[ENA]
¢þ
>WENV180566498
OCLJ01003889
[OCLJ] human gut metagenome; human gut
278
367
+
Ser
TGA
[ENA]
¢þ
>WENV180566503
OCLJ01007311
[OCLJ] human gut metagenome; human gut
295
214
-
Ser
TGA
[ENA]
¢þ
>WENV180566449
OCLJ01000004
[OCLJ] human gut metagenome; human gut
317
388
+
Gly
GCC
[ENA]
¢þ
>WENV180566436
OCLJ01000002
[OCLJ] human gut metagenome; human gut
348
421
+
Trp
CCA
[ENA]
¢þ
>WENV180566499
OCLJ01003889
[OCLJ] human gut metagenome; human gut
400
475
+
fMet
CAT
[ENA]
¢þ
>WENV180566450
OCLJ01000004
[OCLJ] human gut metagenome; human gut
404
489
+
Leu
TAA
[ENA]
¢þ
>WENV180566437
OCLJ01000002
[OCLJ] human gut metagenome; human gut
458
531
+
His
GTG
[ENA]
¢þ
>WENV180566478
OCLJ01000090
[OCLJ] human gut metagenome; human gut
483
411
-
Ile
GAT
[ENA]
¢þ
>WENV180566494
OCLJ01002836
[OCLJ] human gut metagenome; human gut
497
423
-
Met
CAT
[ENA]
¢þ
>WENV180566451
OCLJ01000004
[OCLJ] human gut metagenome; human gut
504
577
+
Arg
ACG
[ENA]
¢þ
>WENV180566500
OCLJ01003889
[OCLJ] human gut metagenome; human gut
522
597
+
Asp
GTC
[ENA]
¢þ
>WENV180566438
OCLJ01000002
[OCLJ] human gut metagenome; human gut
544
617
+
Gln
TTG
[ENA]
¢þ
>WENV180566495
OCLJ01003158
[OCLJ] human gut metagenome; human gut
587
512
-
Val
AAC
[ENA]
¢þ
>WENV180566429
OCLJ01000001
[OCLJ] human gut metagenome; human gut
603
678
+
Asn
GTT
[ENA]
¢þ
>WENV180566439
OCLJ01000002
[OCLJ] human gut metagenome; human gut
642
712
+
Cys
GCA
[ENA]
¢þ
>WENV180566493
OCLJ01002248
[OCLJ] human gut metagenome; human gut
643
715
+
Thr
AGT
[ENA]
¢þ
>WENV180566452
OCLJ01000004
[OCLJ] human gut metagenome; human gut
667
740
+
Pro
TGG
[ENA]
¢þ
>WENV180566440
OCLJ01000002
[OCLJ] human gut metagenome; human gut
725
810
+
Leu
CAA
[ENA]
¢þ
>WENV180566486
OCLJ01000425
[OCLJ] human gut metagenome; human gut
828
901
+
Val
CAC
[ENA]
¢þ
>WENV180566482
OCLJ01000158
[OCLJ] human gut metagenome; human gut
890
960
+
Arg
TCT
[ENA]
¢þ
>WENV180566483
OCLJ01000158
[OCLJ] human gut metagenome; human gut
1051
1125
+
Sup
TCA
[ENA]
¢þ
>WENV180566491
OCLJ01000762
[OCLJ] human gut metagenome; human gut
1069
1154
+
Ile
AAT
[ENA]
¢þ
>WENV180566485
OCLJ01000340
[OCLJ] human gut metagenome; human gut
1099
1173
+
Ala
AGC
[ENA]
¢þ
>WENV180566484
OCLJ01000158
[OCLJ] human gut metagenome; human gut
1123
1193
+
Phe
GAA
[ENA]
¢þ
>WENV180566489
OCLJ01000431
[OCLJ] human gut metagenome; human gut
1252
1178
-
Lys
TTT
[ENA]
¢þ
>WENV180566492
OCLJ01000807
[OCLJ] human gut metagenome; human gut
1262
1192
-
Gly
GCC
[ENA]
¢þ
>WENV180566458
OCLJ01000008
[OCLJ] human gut metagenome; human gut
1484
1410
-
Lys
CTT
[ENA]
¢þ
>WENV180566481
OCLJ01000130
[OCLJ] human gut metagenome; human gut
1559
1489
-
Asn
GTT
[ENA]
¢þ
>WENV180566490
OCLJ01000708
[OCLJ] human gut metagenome; human gut
1610
1681
+
Ile2
CAT
[ENA]
¢þ
>WENV180566477
OCLJ01000090
[OCLJ] human gut metagenome; human gut
1691
1617
-
Pro
TGG
[ENA]
¢þ
>WENV180566476
OCLJ01000090
[OCLJ] human gut metagenome; human gut
1925
1853
-
Gly
TCC
[ENA]
¢þ
>WENV180566487
OCLJ01000431
[OCLJ] human gut metagenome; human gut
1927
2008
+
Leu
TAA
[ENA]
¢þ
>WENV180566488
OCLJ01000431
[OCLJ] human gut metagenome; human gut
2105
2177
+
His
GTG
[ENA]
¢þ
>WENV180566480
OCLJ01000130
[OCLJ] human gut metagenome; human gut
2389
2319
-
Ala
TGC
[ENA]
¢þ
>WENV180566479
OCLJ01000106
[OCLJ] human gut metagenome; human gut
2440
2511
+
Asp
GTC
[ENA]
¢þ
>WENV180566475
OCLJ01000055
[OCLJ] human gut metagenome; human gut
14721
14631
-
Ser
GGA
[ENA]
¢þ
>WENV180566455
OCLJ01000007
[OCLJ] human gut metagenome; human gut
14898
14823
-
Arg
CCT
[ENA]
¢þ
>WENV180566463
OCLJ01000014
[OCLJ] human gut metagenome; human gut
19934
20005
+
Arg
CCG
[ENA]
¢þ
>WENV180566430
OCLJ01000001
[OCLJ] human gut metagenome; human gut
34887
34976
+
Ser
CGA
[ENA]
¢þ
>WENV180566466
OCLJ01000034
[OCLJ] human gut metagenome; human gut
38936
39011
+
Val
TAC
[ENA]
¢þ
>WENV180566467
OCLJ01000034
[OCLJ] human gut metagenome; human gut
39018
39093
+
Thr
TGT
[ENA]
¢þ
>WENV180566468
OCLJ01000034
[OCLJ] human gut metagenome; human gut
39099
39171
+
Lys
TTT
[ENA]
¢þ
>WENV180566469
OCLJ01000034
[OCLJ] human gut metagenome; human gut
39190
39264
+
Gly
GCC
[ENA]
¢þ
>WENV180566470
OCLJ01000034
[OCLJ] human gut metagenome; human gut
39276
39364
+
Leu
TAA
[ENA]
¢þ
>WENV180566471
OCLJ01000034
[OCLJ] human gut metagenome; human gut
39377
39453
+
Arg
ACG
[ENA]
¢þ
>WENV180566472
OCLJ01000034
[OCLJ] human gut metagenome; human gut
39480
39553
+
Pro
TGG
[ENA]
¢þ
>WENV180566453
OCLJ01000006
[OCLJ] human gut metagenome; human gut
40560
40486
-
Arg
TCT
[ENA]
¢þ
>WENV180566454
OCLJ01000007
[OCLJ] human gut metagenome; human gut
65655
65730
+
Arg
TCT
[ENA]
¢þ
>WENV180566459
OCLJ01000012
[OCLJ] human gut metagenome; human gut
75677
75769
+
Ser
TGA
[ENA]
¢þ
>WENV180566464
OCLJ01000015
[OCLJ] human gut metagenome; human gut
80431
80341
-
Ser
GCT
[ENA]
¢þ
>WENV180566444
OCLJ01000003
[OCLJ] human gut metagenome; human gut
81335
81410
+
Ile2
CAT
[ENA]
¢þ
>WENV180566461
OCLJ01000013
[OCLJ] human gut metagenome; human gut
82127
82213
+
Leu
GAG
[ENA]
¢þ
>WENV180566462
OCLJ01000013
[OCLJ] human gut metagenome; human gut
82235
82308
+
Gly
TCC
[ENA]
¢þ
>WENV180566457
OCLJ01000008
[OCLJ] human gut metagenome; human gut
120806
120733
-
Ile2
CAT
[ENA]
¢þ
>WENV180566456
OCLJ01000008
[OCLJ] human gut metagenome; human gut
193183
193110
-
Glu
TTC
[ENA]
¢þ
>WENV180566441
OCLJ01000002
[OCLJ] human gut metagenome; human gut
254037
254123
+
Leu
GAG
[ENA]
¢þ
>WENV180566442
OCLJ01000002
[OCLJ] human gut metagenome; human gut
265370
265452
+
Tyr
GTA
[ENA]
¢þ
>WENV180566443
OCLJ01000002
[OCLJ] human gut metagenome; human gut
265460
265533
+
Gln
TTG
[ENA]
¢þ
>WENV180566431
OCLJ01000001
[OCLJ] human gut metagenome; human gut
273568
273640
+
Thr
CGT
[ENA]
¢þ
>WENV180566445
OCLJ01000003
[OCLJ] human gut metagenome; human gut
304514
304441
-
Arg
CCG
[ENA]
¢þ
>WENV180566432
OCLJ01000001
[OCLJ] human gut metagenome; human gut
560275
560203
-
Thr
GGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK