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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OCLO] human gut metagenome; human gut
HIT:
147 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180568791
OCLO01000004
[OCLO] human gut metagenome; human gut
1
74
+
Pro
TGG
[ENA]
¢þ
>WENV180568924
OCLO01004817
[OCLO] human gut metagenome; human gut
3
77
+
Gly
GCC
[ENA]
¢þ
>WENV180568923
OCLO01004803
[OCLO] human gut metagenome; human gut
3
78
+
His
GTG
[ENA]
¢þ
>WENV180568926
OCLO01004985
[OCLO] human gut metagenome; human gut
5
79
+
Val
TAC
[ENA]
¢þ
>WENV180568922
OCLO01004799
[OCLO] human gut metagenome; human gut
5
96
+
Ser
TGA
[ENA]
¢þ
>WENV180568818
OCLO01000011
[OCLO] human gut metagenome; human gut
64
139
+
Asp
GTC
[ENA]
¢þ
>WENV180568849
OCLO01000065
[OCLO] human gut metagenome; human gut
67
150
+
Tyr
GTA
[ENA]
¢þ
>WENV180568860
OCLO01000067
[OCLO] human gut metagenome; human gut
78
3
-
Asp
GTC
[ENA]
¢þ
>WENV180568925
OCLO01004972
[OCLO] human gut metagenome; human gut
79
3
-
Ile
GAT
[ENA]
¢þ
>WENV180568861
OCLO01000071
[OCLO] human gut metagenome; human gut
82
165
+
Tyr
GTA
[ENA]
¢þ
>WENV180568916
OCLO01004026
[OCLO] human gut metagenome; human gut
83
8
-
Gln
TTG
[ENA]
¢þ
>WENV180568914
OCLO01003523
[OCLO] human gut metagenome; human gut
100
174
+
Glu
TTC
[ENA]
¢þ
>WENV180568917
OCLO01004219
[OCLO] human gut metagenome; human gut
105
195
+
Ser
GCT
[ENA]
¢þ
>WENV180568901
OCLO01000647
[OCLO] human gut metagenome; human gut
119
193
+
Leu
TAA
[ENA]
¢þ
>WENV180568898
OCLO01000527
[OCLO] human gut metagenome; human gut
119
209
+
Ser
GGA
[ENA]
¢þ
>WENV180568921
OCLO01004776
[OCLO] human gut metagenome; human gut
129
56
-
Trp
CCA
[ENA]
¢þ
>WENV180568912
OCLO01002528
[OCLO] human gut metagenome; human gut
133
60
-
Ile2
CAT
[ENA]
¢þ
>WENV180568847
OCLO01000054
[OCLO] human gut metagenome; human gut
137
64
-
Gly
TCC
[ENA]
¢þ
>WENV180568920
OCLO01004775
[OCLO] human gut metagenome; human gut
139
56
-
Leu
TAG
[ENA]
¢þ
>WENV180568835
OCLO01000039
[OCLO] human gut metagenome; human gut
139
66
-
Gly
TCC
[ENA]
¢þ
>WENV180568919
OCLO01004771
[OCLO] human gut metagenome; human gut
141
59
-
Leu
TAG
[ENA]
¢þ
>WENV180568918
OCLO01004769
[OCLO] human gut metagenome; human gut
142
69
-
Pro
TGG
[ENA]
¢þ
>WENV180568865
OCLO01000080
[OCLO] human gut metagenome; human gut
144
69
-
Asp
GTC
[ENA]
¢þ
>WENV180568904
OCLO01000912
[OCLO] human gut metagenome; human gut
147
71
-
fMet
CAT
[ENA]
¢þ
>WENV180568908
OCLO01001804
[OCLO] human gut metagenome; human gut
153
228
+
His
GTG
[ENA]
¢þ
>WENV180568850
OCLO01000065
[OCLO] human gut metagenome; human gut
155
229
+
Gln
TTG
[ENA]
¢þ
>WENV180568913
OCLO01003320
[OCLO] human gut metagenome; human gut
161
71
-
Ser
GGA
[ENA]
¢þ
>WENV180568859
OCLO01000067
[OCLO] human gut metagenome; human gut
166
93
-
fMet
CAT
[ENA]
¢þ
>WENV180568915
OCLO01004026
[OCLO] human gut metagenome; human gut
174
98
-
Arg
TCT
[ENA]
¢þ
>WENV180568862
OCLO01000071
[OCLO] human gut metagenome; human gut
175
249
+
Gln
TTG
[ENA]
¢þ
>WENV180568848
OCLO01000057
[OCLO] human gut metagenome; human gut
181
255
+
Arg
TCT
[ENA]
¢þ
>WENV180568819
OCLO01000011
[OCLO] human gut metagenome; human gut
185
257
+
Phe
GAA
[ENA]
¢þ
>WENV180568893
OCLO01000401
[OCLO] human gut metagenome; human gut
226
141
-
Ser
TGA
[ENA]
¢þ
>WENV180568880
OCLO01000266
[OCLO] human gut metagenome; human gut
232
156
-
fMet
CAT
[ENA]
¢þ
>WENV180568864
OCLO01000080
[OCLO] human gut metagenome; human gut
232
159
-
fMet
CAT
[ENA]
¢þ
>WENV180568851
OCLO01000065
[OCLO] human gut metagenome; human gut
233
306
+
Lys
TTT
[ENA]
¢þ
>WENV180568911
OCLO01002528
[OCLO] human gut metagenome; human gut
234
160
-
Met
CAT
[ENA]
¢þ
>WENV180568846
OCLO01000054
[OCLO] human gut metagenome; human gut
241
159
-
Leu
GAG
[ENA]
¢þ
>WENV180568910
OCLO01002257
[OCLO] human gut metagenome; human gut
243
160
-
Leu
CAA
[ENA]
¢þ
>WENV180568834
OCLO01000039
[OCLO] human gut metagenome; human gut
247
161
-
Leu
GAG
[ENA]
¢þ
>WENV180568863
OCLO01000071
[OCLO] human gut metagenome; human gut
253
326
+
Lys
TTT
[ENA]
¢þ
>WENV180568909
OCLO01002074
[OCLO] human gut metagenome; human gut
254
327
+
Arg
ACG
[ENA]
¢þ
>WENV180568903
OCLO01000912
[OCLO] human gut metagenome; human gut
259
171
-
Leu
TAA
[ENA]
¢þ
>WENV180568820
OCLO01000011
[OCLO] human gut metagenome; human gut
262
344
+
Tyr
GTA
[ENA]
¢þ
>WENV180568906
OCLO01001455
[OCLO] human gut metagenome; human gut
290
218
-
Gln
CTG
[ENA]
¢þ
>WENV180568902
OCLO01000912
[OCLO] human gut metagenome; human gut
346
272
-
Asn
GTT
[ENA]
¢þ
>WENV180568821
OCLO01000011
[OCLO] human gut metagenome; human gut
348
421
+
Trp
CCA
[ENA]
¢þ
>WENV180568907
OCLO01001461
[OCLO] human gut metagenome; human gut
399
313
-
Leu
GAG
[ENA]
¢þ
>WENV180568897
OCLO01000523
[OCLO] human gut metagenome; human gut
414
330
-
Leu
CAA
[ENA]
¢þ
>WENV180568822
OCLO01000011
[OCLO] human gut metagenome; human gut
458
531
+
His
GTG
[ENA]
¢þ
>WENV180568905
OCLO01001206
[OCLO] human gut metagenome; human gut
499
572
+
Gly
GCC
[ENA]
¢þ
>WENV180568823
OCLO01000011
[OCLO] human gut metagenome; human gut
544
617
+
Gln
TTG
[ENA]
¢þ
>WENV180568895
OCLO01000426
[OCLO] human gut metagenome; human gut
566
483
-
Leu
CAG
[ENA]
¢þ
>WENV180568873
OCLO01000189
[OCLO] human gut metagenome; human gut
593
519
-
Ala
CGC
[ENA]
¢þ
>WENV180568896
OCLO01000487
[OCLO] human gut metagenome; human gut
629
556
-
Trp
CCA
[ENA]
¢þ
>WENV180568824
OCLO01000011
[OCLO] human gut metagenome; human gut
642
712
+
Cys
GCA
[ENA]
¢þ
>WENV180568825
OCLO01000011
[OCLO] human gut metagenome; human gut
725
810
+
Leu
CAA
[ENA]
¢þ
>WENV180568884
OCLO01000289
[OCLO] human gut metagenome; human gut
735
814
+
Gln
TTG
[ENA]
¢þ
>WENV180568894
OCLO01000402
[OCLO] human gut metagenome; human gut
757
840
+
Leu
TAG
[ENA]
¢þ
>WENV180568881
OCLO01000285
[OCLO] human gut metagenome; human gut
848
921
+
Glu
TTC
[ENA]
¢þ
>WENV180568870
OCLO01000150
[OCLO] human gut metagenome; human gut
1002
1076
+
Arg
CCT
[ENA]
¢þ
>WENV180568899
OCLO01000530
[OCLO] human gut metagenome; human gut
1007
933
-
Lys
TTT
[ENA]
¢þ
>WENV180568885
OCLO01000298
[OCLO] human gut metagenome; human gut
1029
1103
+
Ile2
CAT
[ENA]
¢þ
>WENV180568878
OCLO01000210
[OCLO] human gut metagenome; human gut
1184
1108
-
Pro
CGG
[ENA]
¢þ
>WENV180568882
OCLO01000285
[OCLO] human gut metagenome; human gut
1283
1357
+
Asp
GTC
[ENA]
¢þ
>WENV180568883
OCLO01000285
[OCLO] human gut metagenome; human gut
1417
1494
+
Phe
GAA
[ENA]
¢þ
>WENV180568900
OCLO01000568
[OCLO] human gut metagenome; human gut
1419
1346
-
Ala
GGC
[ENA]
¢þ
>WENV180568889
OCLO01000346
[OCLO] human gut metagenome; human gut
1480
1409
-
Gly
CCC
[ENA]
¢þ
>WENV180568817
OCLO01000006
[OCLO] human gut metagenome; human gut
1484
1410
-
Lys
CTT
[ENA]
¢þ
>WENV180568876
OCLO01000194
[OCLO] human gut metagenome; human gut
1499
1425
-
Met
CAT
[ENA]
¢þ
>WENV180568875
OCLO01000194
[OCLO] human gut metagenome; human gut
1635
1562
-
Thr
GGT
[ENA]
¢þ
>WENV180568892
OCLO01000375
[OCLO] human gut metagenome; human gut
1692
1618
-
Pro
GGG
[ENA]
¢þ
>WENV180568890
OCLO01000361
[OCLO] human gut metagenome; human gut
1810
1886
+
Ile
GAT
[ENA]
¢þ
>WENV180568874
OCLO01000194
[OCLO] human gut metagenome; human gut
1921
1840
-
Tyr
GTA
[ENA]
¢þ
>WENV180568891
OCLO01000362
[OCLO] human gut metagenome; human gut
2349
2274
-
Arg
TCT
[ENA]
¢þ
>WENV180568839
OCLO01000052
[OCLO] human gut metagenome; human gut
2674
2582
-
Ser
TGA
[ENA]
¢þ
>WENV180568869
OCLO01000146
[OCLO] human gut metagenome; human gut
2999
2928
-
Gly
TCC
[ENA]
¢þ
>WENV180568887
OCLO01000315
[OCLO] human gut metagenome; human gut
3114
3029
-
Ser
GGA
[ENA]
¢þ
>WENV180568888
OCLO01000318
[OCLO] human gut metagenome; human gut
3128
3214
+
Ser
CGA
[ENA]
¢þ
>WENV180568886
OCLO01000307
[OCLO] human gut metagenome; human gut
3534
3459
-
Thr
TGT
[ENA]
¢þ
>WENV180568866
OCLO01000087
[OCLO] human gut metagenome; human gut
3639
3567
-
Arg
CCG
[ENA]
¢þ
>WENV180568832
OCLO01000035
[OCLO] human gut metagenome; human gut
3656
3730
+
Asn
GTT
[ENA]
¢þ
>WENV180568833
OCLO01000035
[OCLO] human gut metagenome; human gut
3732
3822
+
Ser
GCT
[ENA]
¢þ
>WENV180568879
OCLO01000239
[OCLO] human gut metagenome; human gut
3883
3809
-
Lys
CTT
[ENA]
¢þ
>WENV180568868
OCLO01000146
[OCLO] human gut metagenome; human gut
3928
3854
-
Pro
TGG
[ENA]
¢þ
>WENV180568867
OCLO01000138
[OCLO] human gut metagenome; human gut
3943
4016
+
Thr
CGT
[ENA]
¢þ
>WENV180568838
OCLO01000048
[OCLO] human gut metagenome; human gut
4564
4472
-
Ser
TGA
[ENA]
¢þ
>WENV180568877
OCLO01000205
[OCLO] human gut metagenome; human gut
4645
4572
-
Arg
CCG
[ENA]
¢þ
>WENV180568872
OCLO01000169
[OCLO] human gut metagenome; human gut
5186
5113
-
Ala
TGC
[ENA]
¢þ
>WENV180568871
OCLO01000166
[OCLO] human gut metagenome; human gut
6354
6279
-
Val
TAC
[ENA]
¢þ
>WENV180568831
OCLO01000024
[OCLO] human gut metagenome; human gut
19643
19553
-
Ser
GCT
[ENA]
¢þ
>WENV180568830
OCLO01000024
[OCLO] human gut metagenome; human gut
19720
19646
-
Asn
GTT
[ENA]
¢þ
>WENV180568858
OCLO01000067
[OCLO] human gut metagenome; human gut
32653
32570
-
Leu
CAA
[ENA]
¢þ
>WENV180568857
OCLO01000067
[OCLO] human gut metagenome; human gut
33025
32952
-
Cys
GCA
[ENA]
¢þ
>WENV180568856
OCLO01000067
[OCLO] human gut metagenome; human gut
33102
33031
-
Gln
TTG
[ENA]
¢þ
>WENV180568836
OCLO01000046
[OCLO] human gut metagenome; human gut
33180
33254
+
Glu
TTC
[ENA]
¢þ
>WENV180568855
OCLO01000067
[OCLO] human gut metagenome; human gut
33186
33113
-
His
GTG
[ENA]
¢þ
>WENV180568837
OCLO01000046
[OCLO] human gut metagenome; human gut
33260
33332
+
Asp
GTC
[ENA]
¢þ
>WENV180568854
OCLO01000067
[OCLO] human gut metagenome; human gut
33262
33189
-
Trp
CCA
[ENA]
¢þ
>WENV180568853
OCLO01000067
[OCLO] human gut metagenome; human gut
33359
33277
-
Tyr
GTA
[ENA]
¢þ
>WENV180568852
OCLO01000067
[OCLO] human gut metagenome; human gut
33439
33364
-
Thr
TGT
[ENA]
¢þ
>WENV180568790
OCLO01000003
[OCLO] human gut metagenome; human gut
36993
36918
-
Arg
CCT
[ENA]
¢þ
>WENV180568840
OCLO01000053
[OCLO] human gut metagenome; human gut
38936
39011
+
Val
TAC
[ENA]
¢þ
>WENV180568841
OCLO01000053
[OCLO] human gut metagenome; human gut
39018
39093
+
Thr
TGT
[ENA]
¢þ
>WENV180568842
OCLO01000053
[OCLO] human gut metagenome; human gut
39099
39171
+
Lys
TTT
[ENA]
¢þ
>WENV180568843
OCLO01000053
[OCLO] human gut metagenome; human gut
39190
39264
+
Gly
GCC
[ENA]
¢þ
>WENV180568844
OCLO01000053
[OCLO] human gut metagenome; human gut
39276
39364
+
Leu
TAA
[ENA]
¢þ
>WENV180568845
OCLO01000053
[OCLO] human gut metagenome; human gut
39370
39446
+
Arg
ACG
[ENA]
¢þ
>WENV180568829
OCLO01000020
[OCLO] human gut metagenome; human gut
61058
60987
-
Arg
CCG
[ENA]
¢þ
>WENV180568783
OCLO01000002
[OCLO] human gut metagenome; human gut
77610
77682
+
Thr
GGT
[ENA]
¢þ
>WENV180568787
OCLO01000003
[OCLO] human gut metagenome; human gut
87750
87825
+
Arg
TCT
[ENA]
¢þ
>WENV180568780
OCLO01000001
[OCLO] human gut metagenome; human gut
91314
91400
+
Leu
GAG
[ENA]
¢þ
>WENV180568781
OCLO01000001
[OCLO] human gut metagenome; human gut
102647
102729
+
Tyr
GTA
[ENA]
¢þ
>WENV180568782
OCLO01000001
[OCLO] human gut metagenome; human gut
102737
102810
+
Gln
TTG
[ENA]
¢þ
>WENV180568827
OCLO01000015
[OCLO] human gut metagenome; human gut
119077
119151
+
Glu
TTC
[ENA]
¢þ
>WENV180568828
OCLO01000015
[OCLO] human gut metagenome; human gut
119159
119231
+
Asp
GTC
[ENA]
¢þ
>WENV180568816
OCLO01000006
[OCLO] human gut metagenome; human gut
120806
120733
-
Ile2
CAT
[ENA]
¢þ
>WENV180568826
OCLO01000012
[OCLO] human gut metagenome; human gut
156831
156906
+
Arg
TCT
[ENA]
¢þ
>WENV180568815
OCLO01000006
[OCLO] human gut metagenome; human gut
193183
193110
-
Glu
TTC
[ENA]
¢þ
>WENV180568814
OCLO01000006
[OCLO] human gut metagenome; human gut
193286
193197
-
Ser
GCT
[ENA]
¢þ
>WENV180568813
OCLO01000006
[OCLO] human gut metagenome; human gut
193369
193296
-
Ile
GAT
[ENA]
¢þ
>WENV180568812
OCLO01000006
[OCLO] human gut metagenome; human gut
193453
193383
-
Gly
TCC
[ENA]
¢þ
>WENV180568811
OCLO01000006
[OCLO] human gut metagenome; human gut
193541
193464
-
Phe
GAA
[ENA]
¢þ
>WENV180568810
OCLO01000006
[OCLO] human gut metagenome; human gut
193620
193545
-
Asp
GTC
[ENA]
¢þ
>WENV180568809
OCLO01000006
[OCLO] human gut metagenome; human gut
193742
193667
-
fMet
CAT
[ENA]
¢þ
>WENV180568808
OCLO01000006
[OCLO] human gut metagenome; human gut
193864
193775
-
Ser
TGA
[ENA]
¢þ
>WENV180568807
OCLO01000006
[OCLO] human gut metagenome; human gut
193949
193876
-
Glu
TTC
[ENA]
¢þ
>WENV180568806
OCLO01000006
[OCLO] human gut metagenome; human gut
194036
193963
-
Ile
GAT
[ENA]
¢þ
>WENV180568805
OCLO01000006
[OCLO] human gut metagenome; human gut
194120
194050
-
Gly
TCC
[ENA]
¢þ
>WENV180568804
OCLO01000006
[OCLO] human gut metagenome; human gut
194198
194122
-
Asp
GTC
[ENA]
¢þ
>WENV180568803
OCLO01000006
[OCLO] human gut metagenome; human gut
194321
194246
-
fMet
CAT
[ENA]
¢þ
>WENV180568802
OCLO01000006
[OCLO] human gut metagenome; human gut
194443
194354
-
Ser
TGA
[ENA]
¢þ
>WENV180568801
OCLO01000006
[OCLO] human gut metagenome; human gut
194551
194476
-
Ile2
CAT
[ENA]
¢þ
>WENV180568800
OCLO01000006
[OCLO] human gut metagenome; human gut
194645
194570
-
Met
CAT
[ENA]
¢þ
>WENV180568799
OCLO01000006
[OCLO] human gut metagenome; human gut
194741
194667
-
Ala
TGC
[ENA]
¢þ
>WENV180568798
OCLO01000006
[OCLO] human gut metagenome; human gut
194827
194754
-
Pro
TGG
[ENA]
¢þ
>WENV180568797
OCLO01000006
[OCLO] human gut metagenome; human gut
194912
194839
-
Arg
ACG
[ENA]
¢þ
>WENV180568796
OCLO01000006
[OCLO] human gut metagenome; human gut
195012
194927
-
Leu
TAA
[ENA]
¢þ
>WENV180568795
OCLO01000006
[OCLO] human gut metagenome; human gut
195099
195028
-
Gly
GCC
[ENA]
¢þ
>WENV180568794
OCLO01000006
[OCLO] human gut metagenome; human gut
195179
195104
-
Thr
TGT
[ENA]
¢þ
>WENV180568793
OCLO01000006
[OCLO] human gut metagenome; human gut
195268
195185
-
Leu
TAG
[ENA]
¢þ
>WENV180568792
OCLO01000006
[OCLO] human gut metagenome; human gut
195357
195283
-
Lys
TTT
[ENA]
¢þ
>WENV180568788
OCLO01000003
[OCLO] human gut metagenome; human gut
279528
279601
+
Arg
CCG
[ENA]
¢þ
>WENV180568786
OCLO01000002
[OCLO] human gut metagenome; human gut
364317
364245
-
Thr
CGT
[ENA]
¢þ
>WENV180568789
OCLO01000003
[OCLO] human gut metagenome; human gut
502707
502632
-
Ile2
CAT
[ENA]
¢þ
>WENV180568785
OCLO01000002
[OCLO] human gut metagenome; human gut
602998
602909
-
Ser
CGA
[ENA]
¢þ
>WENV180568784
OCLO01000002
[OCLO] human gut metagenome; human gut
637282
637207
-
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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