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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OCLV] marine metagenome; marine
HIT:
78 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180573296
OCLV01002181
[OCLV] marine metagenome; marine
2
75
+
Thr
TGT
[ENA]
¢þ
>WENV180573295
OCLV01002094
[OCLV] marine metagenome; marine
22
113
+
Ser
TGA
[ENA]
¢þ
>WENV180573299
OCLV01002247
[OCLV] marine metagenome; marine
68
154
+
Leu
CAA
[ENA]
¢þ
>WENV180573297
OCLV01002235
[OCLV] marine metagenome; marine
85
169
+
Leu
TAG
[ENA]
¢þ
>WENV180573230
OCLV01000213
[OCLV] marine metagenome; marine
127
202
+
Asp
GTC
[ENA]
¢þ
>WENV180573292
OCLV01001799
[OCLV] marine metagenome; marine
197
282
+
Leu
GAG
[ENA]
¢þ
>WENV180573286
OCLV01001729
[OCLV] marine metagenome; marine
207
120
-
Leu
TAA
[ENA]
¢þ
>WENV180573269
OCLV01001219
[OCLV] marine metagenome; marine
212
297
+
Tyr
GTA
[ENA]
¢þ
>WENV180573291
OCLV01001789
[OCLV] marine metagenome; marine
218
136
-
Leu
CAA
[ENA]
¢þ
>WENV180573262
OCLV01000883
[OCLV] marine metagenome; marine
314
400
+
Ser
GGA
[ENA]
¢þ
>WENV180573270
OCLV01001219
[OCLV] marine metagenome; marine
342
415
+
Gly
TCC
[ENA]
¢þ
>WENV180573267
OCLV01001109
[OCLV] marine metagenome; marine
371
297
-
Pro
TGG
[ENA]
¢þ
>WENV180573300
OCLV01002383
[OCLV] marine metagenome; marine
376
451
+
Arg
CCT
[ENA]
¢þ
>WENV180573238
OCLV01000276
[OCLV] marine metagenome; marine
389
315
-
Ala
TGC
[ENA]
¢þ
>WENV180573288
OCLV01001754
[OCLV] marine metagenome; marine
411
338
-
Ala
TGC
[ENA]
¢þ
>WENV180573282
OCLV01001556
[OCLV] marine metagenome; marine
421
510
+
Ser
GGA
[ENA]
¢þ
>WENV180573285
OCLV01001727
[OCLV] marine metagenome; marine
430
357
-
Gln
CTG
[ENA]
¢þ
>WENV180573260
OCLV01000826
[OCLV] marine metagenome; marine
448
524
+
fMet
CAT
[ENA]
¢þ
>WENV180573279
OCLV01001479
[OCLV] marine metagenome; marine
450
375
-
Lys
TTT
[ENA]
¢þ
>WENV180573290
OCLV01001781
[OCLV] marine metagenome; marine
500
426
-
Thr
GGT
[ENA]
¢þ
>WENV180573233
OCLV01000240
[OCLV] marine metagenome; marine
505
589
+
Leu
CAA
[ENA]
¢þ
>WENV180573293
OCLV01001862
[OCLV] marine metagenome; marine
509
582
+
Cys
GCA
[ENA]
¢þ
>WENV180573287
OCLV01001754
[OCLV] marine metagenome; marine
514
440
-
Ile
GAT
[ENA]
¢þ
>WENV180573298
OCLV01002241
[OCLV] marine metagenome; marine
524
441
-
Leu
AAG
[ENA]
¢þ
>WENV180573274
OCLV01001390
[OCLV] marine metagenome; marine
531
455
-
Met
CAT
[ENA]
¢þ
>WENV180573237
OCLV01000276
[OCLV] marine metagenome; marine
540
466
-
Ile
GAT
[ENA]
¢þ
>WENV180573271
OCLV01001327
[OCLV] marine metagenome; marine
567
642
+
Val
TAC
[ENA]
¢þ
>WENV180573280
OCLV01001508
[OCLV] marine metagenome; marine
587
676
+
Ser
GGA
[ENA]
¢þ
>WENV180573261
OCLV01000882
[OCLV] marine metagenome; marine
603
677
+
Ala
GGC
[ENA]
¢þ
>WENV180573289
OCLV01001781
[OCLV] marine metagenome; marine
603
689
+
Ser
GGA
[ENA]
¢þ
>WENV180573294
OCLV01001862
[OCLV] marine metagenome; marine
631
706
+
Asn
GTT
[ENA]
¢þ
>WENV180573256
OCLV01000771
[OCLV] marine metagenome; marine
635
720
+
Leu
GAG
[ENA]
¢þ
>WENV180573249
OCLV01000512
[OCLV] marine metagenome; marine
644
720
+
Pro
TGG
[ENA]
¢þ
>WENV180573272
OCLV01001327
[OCLV] marine metagenome; marine
653
729
+
Asp
GTC
[ENA]
¢þ
>WENV180573255
OCLV01000700
[OCLV] marine metagenome; marine
675
748
+
Asn
GTT
[ENA]
¢þ
>WENV180573242
OCLV01000380
[OCLV] marine metagenome; marine
682
608
-
Gly
GCC
[ENA]
¢þ
>WENV180573264
OCLV01000987
[OCLV] marine metagenome; marine
703
777
+
Glu
TTC
[ENA]
¢þ
>WENV180573268
OCLV01001112
[OCLV] marine metagenome; marine
706
782
+
fMet
CAT
[ENA]
¢þ
>WENV180573253
OCLV01000622
[OCLV] marine metagenome; marine
747
674
-
Ala
TGC
[ENA]
¢þ
>WENV180573266
OCLV01001090
[OCLV] marine metagenome; marine
748
818
+
Gly
TCC
[ENA]
¢þ
>WENV180573259
OCLV01000806
[OCLV] marine metagenome; marine
754
836
+
Leu
TAG
[ENA]
¢þ
>WENV180573244
OCLV01000439
[OCLV] marine metagenome; marine
768
853
+
Leu
TAA
[ENA]
¢þ
>WENV180573232
OCLV01000237
[OCLV] marine metagenome; marine
769
844
+
Trp
CCA
[ENA]
¢þ
>WENV180573257
OCLV01000771
[OCLV] marine metagenome; marine
771
847
+
fMet
CAT
[ENA]
¢þ
>WENV180573239
OCLV01000282
[OCLV] marine metagenome; marine
773
848
+
Phe
GAA
[ENA]
¢þ
>WENV180573254
OCLV01000640
[OCLV] marine metagenome; marine
778
854
+
Met
CAT
[ENA]
¢þ
>WENV180573243
OCLV01000407
[OCLV] marine metagenome; marine
781
692
-
Ser
GGA
[ENA]
¢þ
>WENV180573281
OCLV01001546
[OCLV] marine metagenome; marine
785
875
+
Ser
GCT
[ENA]
¢þ
>WENV180573258
OCLV01000795
[OCLV] marine metagenome; marine
790
866
+
Met
CAT
[ENA]
¢þ
>WENV180573275
OCLV01001413
[OCLV] marine metagenome; marine
794
867
+
Cys
GCA
[ENA]
¢þ
>WENV180573236
OCLV01000271
[OCLV] marine metagenome; marine
813
887
+
Ile2
CAT
[ENA]
¢þ
>WENV180573234
OCLV01000266
[OCLV] marine metagenome; marine
814
898
+
Leu
TAA
[ENA]
¢þ
>WENV180573231
OCLV01000224
[OCLV] marine metagenome; marine
819
895
+
fMet
CAT
[ENA]
¢þ
>WENV180573228
OCLV01000161
[OCLV] marine metagenome; marine
822
898
+
Arg
TCT
[ENA]
¢þ
>WENV180573273
OCLV01001351
[OCLV] marine metagenome; marine
826
900
+
Ala
CGC
[ENA]
¢þ
>WENV180573252
OCLV01000622
[OCLV] marine metagenome; marine
834
759
-
Ile
GAT
[ENA]
¢þ
>WENV180573265
OCLV01001068
[OCLV] marine metagenome; marine
847
763
-
Leu
CAA
[ENA]
¢þ
>WENV180573251
OCLV01000610
[OCLV] marine metagenome; marine
860
772
-
Ser
TGA
[ENA]
¢þ
>WENV180573284
OCLV01001627
[OCLV] marine metagenome; marine
870
795
-
Val
TAC
[ENA]
¢þ
>WENV180573263
OCLV01000972
[OCLV] marine metagenome; marine
876
793
-
Leu
GAG
[ENA]
¢þ
>WENV180573283
OCLV01001621
[OCLV] marine metagenome; marine
881
807
-
Gly
GCC
[ENA]
¢þ
>WENV180573250
OCLV01000550
[OCLV] marine metagenome; marine
885
796
-
Ser
TGA
[ENA]
¢þ
>WENV180573235
OCLV01000270
[OCLV] marine metagenome; marine
904
818
-
Leu
CAA
[ENA]
¢þ
>WENV180573276
OCLV01001413
[OCLV] marine metagenome; marine
916
990
+
Asn
GTT
[ENA]
¢þ
>WENV180573240
OCLV01000304
[OCLV] marine metagenome; marine
990
1066
+
Glu
TTC
[ENA]
¢þ
>WENV180573245
OCLV01000503
[OCLV] marine metagenome; marine
997
1072
+
Glu
TTC
[ENA]
¢þ
>WENV180573277
OCLV01001445
[OCLV] marine metagenome; marine
1010
1099
+
Ser
GGA
[ENA]
¢þ
>WENV180573246
OCLV01000503
[OCLV] marine metagenome; marine
1077
1149
+
Gln
CTG
[ENA]
¢þ
>WENV180573241
OCLV01000304
[OCLV] marine metagenome; marine
1078
1153
+
Ala
GGC
[ENA]
¢þ
>WENV180573278
OCLV01001459
[OCLV] marine metagenome; marine
1083
992
-
Ser
GCT
[ENA]
¢þ
>WENV180573247
OCLV01000503
[OCLV] marine metagenome; marine
1153
1226
+
Glu
CTC
[ENA]
¢þ
>WENV180573226
OCLV01000094
[OCLV] marine metagenome; marine
1185
1109
-
Asp
GTC
[ENA]
¢þ
>WENV180573225
OCLV01000094
[OCLV] marine metagenome; marine
1272
1197
-
Val
TAC
[ENA]
¢þ
>WENV180573229
OCLV01000162
[OCLV] marine metagenome; marine
1354
1424
+
Cys
GCA
[ENA]
¢þ
>WENV180573227
OCLV01000100
[OCLV] marine metagenome; marine
1377
1303
-
Gln
TTG
[ENA]
¢þ
>WENV180573248
OCLV01000505
[OCLV] marine metagenome; marine
1406
1320
-
Leu
CAG
[ENA]
¢þ
>WENV180573224
OCLV01000005
[OCLV] marine metagenome; marine
1754
1679
-
Ala
TGC
[ENA]
¢þ
>WENV180573223
OCLV01000005
[OCLV] marine metagenome; marine
1843
1767
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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