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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OCQI] human gut metagenome; human gut
HIT:
126 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180625040
OCQI01004986
[OCQI] human gut metagenome; human gut
3
76
+
His
GTG
[ENA]
¢þ
>WENV180625038
OCQI01004964
[OCQI] human gut metagenome; human gut
5
79
+
Val
TAC
[ENA]
¢þ
>WENV180625028
OCQI01003778
[OCQI] human gut metagenome; human gut
19
95
+
Asp
GTC
[ENA]
¢þ
>WENV180625026
OCQI01003438
[OCQI] human gut metagenome; human gut
36
108
+
Arg
TCT
[ENA]
¢þ
>WENV180624935
OCQI01000003
[OCQI] human gut metagenome; human gut
59
133
+
Lys
TTT
[ENA]
¢þ
>WENV180625037
OCQI01004732
[OCQI] human gut metagenome; human gut
59
142
+
Tyr
GTA
[ENA]
¢þ
>WENV180624916
OCQI01000001
[OCQI] human gut metagenome; human gut
64
139
+
Asp
GTC
[ENA]
¢þ
>WENV180625041
OCQI01005014
[OCQI] human gut metagenome; human gut
72
1
-
Gln
TTG
[ENA]
¢þ
>WENV180625020
OCQI01001046
[OCQI] human gut metagenome; human gut
76
151
+
Met
CAT
[ENA]
¢þ
>WENV180625036
OCQI01004719
[OCQI] human gut metagenome; human gut
79
3
-
Ile
GAT
[ENA]
¢þ
>WENV180625039
OCQI01004968
[OCQI] human gut metagenome; human gut
79
6
-
Gly
TCC
[ENA]
¢þ
>WENV180625033
OCQI01004442
[OCQI] human gut metagenome; human gut
85
156
+
Ile2
CAT
[ENA]
¢þ
>WENV180625016
OCQI01000129
[OCQI] human gut metagenome; human gut
96
179
+
Leu
CAA
[ENA]
¢þ
>WENV180625024
OCQI01002011
[OCQI] human gut metagenome; human gut
109
195
+
Leu
GAG
[ENA]
¢þ
>WENV180625022
OCQI01001166
[OCQI] human gut metagenome; human gut
122
51
-
Met
CAT
[ENA]
¢þ
>WENV180625029
OCQI01003778
[OCQI] human gut metagenome; human gut
122
197
+
Thr
CGT
[ENA]
¢þ
>WENV180625027
OCQI01003438
[OCQI] human gut metagenome; human gut
126
196
+
Val
TAC
[ENA]
¢þ
>WENV180625032
OCQI01004133
[OCQI] human gut metagenome; human gut
128
200
+
Ile
GAT
[ENA]
¢þ
>WENV180625035
OCQI01004697
[OCQI] human gut metagenome; human gut
129
56
-
Trp
CCA
[ENA]
¢þ
>WENV180625034
OCQI01004640
[OCQI] human gut metagenome; human gut
141
59
-
Leu
TAG
[ENA]
¢þ
>WENV180625008
OCQI01000057
[OCQI] human gut metagenome; human gut
144
69
-
Asp
GTC
[ENA]
¢þ
>WENV180624936
OCQI01000003
[OCQI] human gut metagenome; human gut
148
231
+
Leu
TAG
[ENA]
¢þ
>WENV180625019
OCQI01000575
[OCQI] human gut metagenome; human gut
153
62
-
Ser
TGA
[ENA]
¢þ
>WENV180625031
OCQI01004066
[OCQI] human gut metagenome; human gut
154
81
-
Val
CAC
[ENA]
¢þ
>WENV180625030
OCQI01003901
[OCQI] human gut metagenome; human gut
158
85
-
Cys
GCA
[ENA]
¢þ
>WENV180625025
OCQI01002374
[OCQI] human gut metagenome; human gut
161
71
-
Ser
GGA
[ENA]
¢þ
>WENV180625021
OCQI01001046
[OCQI] human gut metagenome; human gut
170
245
+
Ile2
CAT
[ENA]
¢þ
>WENV180624975
OCQI01000014
[OCQI] human gut metagenome; human gut
173
100
-
Asn
GTT
[ENA]
¢þ
>WENV180624917
OCQI01000001
[OCQI] human gut metagenome; human gut
185
257
+
Phe
GAA
[ENA]
¢þ
>WENV180625007
OCQI01000057
[OCQI] human gut metagenome; human gut
232
159
-
fMet
CAT
[ENA]
¢þ
>WENV180625018
OCQI01000575
[OCQI] human gut metagenome; human gut
235
162
-
Ile2
CAT
[ENA]
¢þ
>WENV180624937
OCQI01000003
[OCQI] human gut metagenome; human gut
237
312
+
Thr
TGT
[ENA]
¢þ
>WENV180624918
OCQI01000001
[OCQI] human gut metagenome; human gut
262
344
+
Tyr
GTA
[ENA]
¢þ
>WENV180625023
OCQI01001828
[OCQI] human gut metagenome; human gut
270
200
-
Ala
TGC
[ENA]
¢þ
>WENV180624938
OCQI01000003
[OCQI] human gut metagenome; human gut
317
388
+
Gly
GCC
[ENA]
¢þ
>WENV180625017
OCQI01000575
[OCQI] human gut metagenome; human gut
336
262
-
Met
CAT
[ENA]
¢þ
>WENV180624919
OCQI01000001
[OCQI] human gut metagenome; human gut
348
421
+
Trp
CCA
[ENA]
¢þ
>WENV180624939
OCQI01000003
[OCQI] human gut metagenome; human gut
404
489
+
Leu
TAA
[ENA]
¢þ
>WENV180624920
OCQI01000001
[OCQI] human gut metagenome; human gut
458
531
+
His
GTG
[ENA]
¢þ
>WENV180624940
OCQI01000003
[OCQI] human gut metagenome; human gut
504
577
+
Arg
ACG
[ENA]
¢þ
>WENV180624921
OCQI01000001
[OCQI] human gut metagenome; human gut
544
617
+
Gln
TTG
[ENA]
¢þ
>WENV180624922
OCQI01000001
[OCQI] human gut metagenome; human gut
642
712
+
Cys
GCA
[ENA]
¢þ
>WENV180624941
OCQI01000003
[OCQI] human gut metagenome; human gut
667
740
+
Pro
TGG
[ENA]
¢þ
>WENV180624923
OCQI01000001
[OCQI] human gut metagenome; human gut
725
810
+
Leu
CAA
[ENA]
¢þ
>WENV180624967
OCQI01000009
[OCQI] human gut metagenome; human gut
1484
1410
-
Lys
CTT
[ENA]
¢þ
>WENV180624991
OCQI01000042
[OCQI] human gut metagenome; human gut
2582
2492
-
Ser
GCT
[ENA]
¢þ
>WENV180624972
OCQI01000013
[OCQI] human gut metagenome; human gut
2586
2512
-
Ala
CGC
[ENA]
¢þ
>WENV180624990
OCQI01000042
[OCQI] human gut metagenome; human gut
2659
2585
-
Asn
GTT
[ENA]
¢þ
>WENV180625015
OCQI01000104
[OCQI] human gut metagenome; human gut
5428
5502
+
Leu
TAA
[ENA]
¢þ
>WENV180624993
OCQI01000045
[OCQI] human gut metagenome; human gut
6199
6126
-
Thr
CGT
[ENA]
¢þ
>WENV180625011
OCQI01000069
[OCQI] human gut metagenome; human gut
7483
7408
-
Arg
TCT
[ENA]
¢þ
>WENV180625005
OCQI01000053
[OCQI] human gut metagenome; human gut
8226
8300
+
Lys
CTT
[ENA]
¢þ
>WENV180625012
OCQI01000075
[OCQI] human gut metagenome; human gut
9529
9603
+
Glu
TTC
[ENA]
¢þ
>WENV180625010
OCQI01000069
[OCQI] human gut metagenome; human gut
9566
9641
+
His
GTG
[ENA]
¢þ
>WENV180625013
OCQI01000075
[OCQI] human gut metagenome; human gut
9609
9681
+
Asp
GTC
[ENA]
¢þ
>WENV180625009
OCQI01000059
[OCQI] human gut metagenome; human gut
10903
10982
+
Gln
TTG
[ENA]
¢þ
>WENV180624976
OCQI01000015
[OCQI] human gut metagenome; human gut
13170
13244
+
Ile2
CAT
[ENA]
¢þ
>WENV180625006
OCQI01000053
[OCQI] human gut metagenome; human gut
13343
13426
+
Leu
TAG
[ENA]
¢þ
>WENV180624970
OCQI01000013
[OCQI] human gut metagenome; human gut
13488
13562
+
Arg
CCT
[ENA]
¢þ
>WENV180625004
OCQI01000052
[OCQI] human gut metagenome; human gut
14290
14216
-
Val
GAC
[ENA]
¢þ
>WENV180625003
OCQI01000052
[OCQI] human gut metagenome; human gut
14362
14291
-
Cys
GCA
[ENA]
¢þ
>WENV180625002
OCQI01000052
[OCQI] human gut metagenome; human gut
14463
14390
-
Gly
GCC
[ENA]
¢þ
>WENV180625001
OCQI01000052
[OCQI] human gut metagenome; human gut
14961
15035
+
Val
CAC
[ENA]
¢þ
>WENV180625014
OCQI01000083
[OCQI] human gut metagenome; human gut
15130
15040
-
Ser
GGA
[ENA]
¢þ
>WENV180624986
OCQI01000023
[OCQI] human gut metagenome; human gut
18259
18330
+
Arg
CCG
[ENA]
¢þ
>WENV180624947
OCQI01000006
[OCQI] human gut metagenome; human gut
30359
30283
-
fMet
CAT
[ENA]
¢þ
>WENV180624948
OCQI01000007
[OCQI] human gut metagenome; human gut
33793
33869
+
Pro
CGG
[ENA]
¢þ
>WENV180624992
OCQI01000043
[OCQI] human gut metagenome; human gut
33831
33747
-
Leu
CAA
[ENA]
¢þ
>WENV180624983
OCQI01000022
[OCQI] human gut metagenome; human gut
34712
34787
+
Val
TAC
[ENA]
¢þ
>WENV180624934
OCQI01000002
[OCQI] human gut metagenome; human gut
36993
36918
-
Arg
CCT
[ENA]
¢þ
>WENV180624971
OCQI01000013
[OCQI] human gut metagenome; human gut
37618
37543
-
Thr
TGT
[ENA]
¢þ
>WENV180624994
OCQI01000047
[OCQI] human gut metagenome; human gut
39458
39533
+
Val
TAC
[ENA]
¢þ
>WENV180624995
OCQI01000047
[OCQI] human gut metagenome; human gut
39540
39615
+
Thr
TGT
[ENA]
¢þ
>WENV180624996
OCQI01000047
[OCQI] human gut metagenome; human gut
39621
39695
+
Lys
TTT
[ENA]
¢þ
>WENV180624997
OCQI01000047
[OCQI] human gut metagenome; human gut
39713
39787
+
Gly
GCC
[ENA]
¢þ
>WENV180624998
OCQI01000047
[OCQI] human gut metagenome; human gut
39799
39887
+
Leu
TAA
[ENA]
¢þ
>WENV180624999
OCQI01000047
[OCQI] human gut metagenome; human gut
39900
39976
+
Arg
ACG
[ENA]
¢þ
>WENV180625000
OCQI01000047
[OCQI] human gut metagenome; human gut
40003
40077
+
Pro
TGG
[ENA]
¢þ
>WENV180624989
OCQI01000038
[OCQI] human gut metagenome; human gut
40070
40162
+
Ser
TGA
[ENA]
¢þ
>WENV180624985
OCQI01000022
[OCQI] human gut metagenome; human gut
44846
44771
-
Glu
CTC
[ENA]
¢þ
>WENV180624984
OCQI01000022
[OCQI] human gut metagenome; human gut
45054
44982
-
Gln
CTG
[ENA]
¢þ
>WENV180624988
OCQI01000024
[OCQI] human gut metagenome; human gut
50244
50173
-
Gly
TCC
[ENA]
¢þ
>WENV180624987
OCQI01000024
[OCQI] human gut metagenome; human gut
51173
51099
-
Pro
TGG
[ENA]
¢þ
>WENV180624957
OCQI01000008
[OCQI] human gut metagenome; human gut
51457
51386
-
Gly
CCC
[ENA]
¢þ
>WENV180624946
OCQI01000006
[OCQI] human gut metagenome; human gut
54479
54406
-
Arg
CCG
[ENA]
¢þ
>WENV180624942
OCQI01000004
[OCQI] human gut metagenome; human gut
71793
71869
+
Ile
GAT
[ENA]
¢þ
>WENV180624952
OCQI01000007
[OCQI] human gut metagenome; human gut
78179
78093
-
Ser
CGA
[ENA]
¢þ
>WENV180624982
OCQI01000019
[OCQI] human gut metagenome; human gut
81684
81611
-
Lys
TTT
[ENA]
¢þ
>WENV180624980
OCQI01000016
[OCQI] human gut metagenome; human gut
82023
81950
-
Trp
CCA
[ENA]
¢þ
>WENV180624979
OCQI01000016
[OCQI] human gut metagenome; human gut
87214
87140
-
Met
CAT
[ENA]
¢þ
>WENV180624978
OCQI01000016
[OCQI] human gut metagenome; human gut
87350
87277
-
Thr
GGT
[ENA]
¢þ
>WENV180624977
OCQI01000016
[OCQI] human gut metagenome; human gut
87636
87555
-
Tyr
GTA
[ENA]
¢þ
>WENV180624931
OCQI01000002
[OCQI] human gut metagenome; human gut
87750
87825
+
Arg
TCT
[ENA]
¢þ
>WENV180624951
OCQI01000007
[OCQI] human gut metagenome; human gut
89239
89166
-
Arg
ACG
[ENA]
¢þ
>WENV180624950
OCQI01000007
[OCQI] human gut metagenome; human gut
89538
89448
-
Ser
GCT
[ENA]
¢þ
>WENV180624981
OCQI01000017
[OCQI] human gut metagenome; human gut
92156
92239
+
Leu
CAG
[ENA]
¢þ
>WENV180624949
OCQI01000007
[OCQI] human gut metagenome; human gut
97213
97128
-
Ser
TGA
[ENA]
¢þ
>WENV180624973
OCQI01000014
[OCQI] human gut metagenome; human gut
97595
97670
+
Ala
GGC
[ENA]
¢þ
>WENV180624974
OCQI01000014
[OCQI] human gut metagenome; human gut
97740
97813
+
Ala
GGC
[ENA]
¢þ
>WENV180624945
OCQI01000006
[OCQI] human gut metagenome; human gut
103226
103152
-
Pro
GGG
[ENA]
¢þ
>WENV180624966
OCQI01000009
[OCQI] human gut metagenome; human gut
120806
120733
-
Ile2
CAT
[ENA]
¢þ
>WENV180624969
OCQI01000012
[OCQI] human gut metagenome; human gut
141744
141658
-
Leu
GAG
[ENA]
¢þ
>WENV180624968
OCQI01000011
[OCQI] human gut metagenome; human gut
156508
156582
+
Arg
TCT
[ENA]
¢þ
>WENV180624956
OCQI01000008
[OCQI] human gut metagenome; human gut
162628
162551
-
Phe
GAA
[ENA]
¢þ
>WENV180624955
OCQI01000008
[OCQI] human gut metagenome; human gut
162762
162688
-
Asp
GTC
[ENA]
¢þ
>WENV180624954
OCQI01000008
[OCQI] human gut metagenome; human gut
163197
163124
-
Glu
TTC
[ENA]
¢þ
>WENV180624953
OCQI01000008
[OCQI] human gut metagenome; human gut
165499
165573
+
Lys
TTT
[ENA]
¢þ
>WENV180624944
OCQI01000004
[OCQI] human gut metagenome; human gut
177730
177657
-
Ala
TGC
[ENA]
¢þ
>WENV180624965
OCQI01000009
[OCQI] human gut metagenome; human gut
193183
193110
-
Glu
TTC
[ENA]
¢þ
>WENV180624964
OCQI01000009
[OCQI] human gut metagenome; human gut
193286
193197
-
Ser
GCT
[ENA]
¢þ
>WENV180624963
OCQI01000009
[OCQI] human gut metagenome; human gut
193369
193296
-
Ile
GAT
[ENA]
¢þ
>WENV180624962
OCQI01000009
[OCQI] human gut metagenome; human gut
193453
193383
-
Gly
TCC
[ENA]
¢þ
>WENV180624961
OCQI01000009
[OCQI] human gut metagenome; human gut
193541
193464
-
Phe
GAA
[ENA]
¢þ
>WENV180624960
OCQI01000009
[OCQI] human gut metagenome; human gut
193620
193545
-
Asp
GTC
[ENA]
¢þ
>WENV180624959
OCQI01000009
[OCQI] human gut metagenome; human gut
193732
193657
-
fMet
CAT
[ENA]
¢þ
>WENV180624958
OCQI01000009
[OCQI] human gut metagenome; human gut
193854
193765
-
Ser
TGA
[ENA]
¢þ
>WENV180624924
OCQI01000001
[OCQI] human gut metagenome; human gut
254037
254123
+
Leu
GAG
[ENA]
¢þ
>WENV180624925
OCQI01000001
[OCQI] human gut metagenome; human gut
265370
265452
+
Tyr
GTA
[ENA]
¢þ
>WENV180624926
OCQI01000001
[OCQI] human gut metagenome; human gut
265460
265533
+
Gln
TTG
[ENA]
¢þ
>WENV180624932
OCQI01000002
[OCQI] human gut metagenome; human gut
279528
279601
+
Arg
CCG
[ENA]
¢þ
>WENV180624943
OCQI01000004
[OCQI] human gut metagenome; human gut
297691
297606
-
Ser
GGA
[ENA]
¢þ
>WENV180624933
OCQI01000002
[OCQI] human gut metagenome; human gut
502707
502632
-
Ile2
CAT
[ENA]
¢þ
>WENV180624927
OCQI01000001
[OCQI] human gut metagenome; human gut
888598
888670
+
Thr
GGT
[ENA]
¢þ
>WENV180624930
OCQI01000001
[OCQI] human gut metagenome; human gut
1175305
1175233
-
Thr
CGT
[ENA]
¢þ
>WENV180624929
OCQI01000001
[OCQI] human gut metagenome; human gut
1413986
1413897
-
Ser
CGA
[ENA]
¢þ
>WENV180624928
OCQI01000001
[OCQI] human gut metagenome; human gut
1448270
1448195
-
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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