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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[ODDB] human metagenome; G_DNA_Tongue dorsum
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180697164
ODDB01006125
[ODDB] human metagenome; G_DNA_Tongue dorsum
31
104
+
Val
CAC
[ENA]
¢þ
>WENV180697174
ODDB01009834
[ODDB] human metagenome; G_DNA_Tongue dorsum
33
106
+
Gln
TTG
[ENA]
¢þ
>WENV180697156
ODDB01002415
[ODDB] human metagenome; G_DNA_Tongue dorsum
36
108
+
Val
GAC
[ENA]
¢þ
>WENV180697166
ODDB01006723
[ODDB] human metagenome; G_DNA_Tongue dorsum
43
117
+
Glu
TTC
[ENA]
¢þ
>WENV180697141
ODDB01001199
[ODDB] human metagenome; G_DNA_Tongue dorsum
75
157
+
Tyr
GTA
[ENA]
¢þ
>WENV180697151
ODDB01001582
[ODDB] human metagenome; G_DNA_Tongue dorsum
81
7
-
Val
TAC
[ENA]
¢þ
>WENV180697171
ODDB01008646
[ODDB] human metagenome; G_DNA_Tongue dorsum
92
167
+
Thr
CGT
[ENA]
¢þ
>WENV180697173
ODDB01009597
[ODDB] human metagenome; G_DNA_Tongue dorsum
101
25
-
fMet
CAT
[ENA]
¢þ
>WENV180697159
ODDB01002634
[ODDB] human metagenome; G_DNA_Tongue dorsum
101
28
-
Arg
ACG
[ENA]
¢þ
>WENV180697170
ODDB01008183
[ODDB] human metagenome; G_DNA_Tongue dorsum
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180697175
ODDB01009834
[ODDB] human metagenome; G_DNA_Tongue dorsum
118
190
+
Cys
GCA
[ENA]
¢þ
>WENV180697137
ODDB01000726
[ODDB] human metagenome; G_DNA_Tongue dorsum
120
45
-
Glu
TTC
[ENA]
¢þ
>WENV180697167
ODDB01006723
[ODDB] human metagenome; G_DNA_Tongue dorsum
122
197
+
Val
TAC
[ENA]
¢þ
>WENV180697146
ODDB01001346
[ODDB] human metagenome; G_DNA_Tongue dorsum
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180697114
ODDB01000023
[ODDB] human metagenome; G_DNA_Tongue dorsum
135
207
+
Asn
GTT
[ENA]
¢þ
>WENV180697168
ODDB01007775
[ODDB] human metagenome; G_DNA_Tongue dorsum
138
64
-
Pro
GGG
[ENA]
¢þ
>WENV180697172
ODDB01008728
[ODDB] human metagenome; G_DNA_Tongue dorsum
146
73
-
Gly
TCC
[ENA]
¢þ
>WENV180697153
ODDB01001721
[ODDB] human metagenome; G_DNA_Tongue dorsum
173
247
+
Ala
TGC
[ENA]
¢þ
>WENV180697158
ODDB01002602
[ODDB] human metagenome; G_DNA_Tongue dorsum
178
253
+
Thr
TGT
[ENA]
¢þ
>WENV180697165
ODDB01006503
[ODDB] human metagenome; G_DNA_Tongue dorsum
180
88
-
Ser
TGA
[ENA]
¢þ
>WENV180697129
ODDB01000429
[ODDB] human metagenome; G_DNA_Tongue dorsum
196
122
-
Ala
TGC
[ENA]
¢þ
>WENV180697169
ODDB01008183
[ODDB] human metagenome; G_DNA_Tongue dorsum
211
123
-
Leu
TAA
[ENA]
¢þ
>WENV180697139
ODDB01001032
[ODDB] human metagenome; G_DNA_Tongue dorsum
217
290
+
Trp
CCA
[ENA]
¢þ
>WENV180697163
ODDB01003947
[ODDB] human metagenome; G_DNA_Tongue dorsum
226
142
-
Leu
TAG
[ENA]
¢þ
>WENV180697145
ODDB01001346
[ODDB] human metagenome; G_DNA_Tongue dorsum
230
157
-
Gly
GCC
[ENA]
¢þ
>WENV180697161
ODDB01003389
[ODDB] human metagenome; G_DNA_Tongue dorsum
231
303
+
Thr
GGT
[ENA]
¢þ
>WENV180697162
ODDB01003907
[ODDB] human metagenome; G_DNA_Tongue dorsum
234
310
+
Ile2
CAT
[ENA]
¢þ
>WENV180697148
ODDB01001403
[ODDB] human metagenome; G_DNA_Tongue dorsum
244
169
-
Glu
CTC
[ENA]
¢þ
>WENV180697149
ODDB01001408
[ODDB] human metagenome; G_DNA_Tongue dorsum
263
346
+
Leu
CAG
[ENA]
¢þ
>WENV180697136
ODDB01000726
[ODDB] human metagenome; G_DNA_Tongue dorsum
274
199
-
Ala
GGC
[ENA]
¢þ
>WENV180697157
ODDB01002487
[ODDB] human metagenome; G_DNA_Tongue dorsum
279
364
+
Ser
TGA
[ENA]
¢þ
>WENV180697160
ODDB01002917
[ODDB] human metagenome; G_DNA_Tongue dorsum
296
370
+
Lys
CTT
[ENA]
¢þ
>WENV180697135
ODDB01000693
[ODDB] human metagenome; G_DNA_Tongue dorsum
315
239
-
Pro
CGG
[ENA]
¢þ
>WENV180697155
ODDB01001853
[ODDB] human metagenome; G_DNA_Tongue dorsum
334
249
-
Ser
TGA
[ENA]
¢þ
>WENV180697142
ODDB01001199
[ODDB] human metagenome; G_DNA_Tongue dorsum
358
431
+
Thr
GGT
[ENA]
¢þ
>WENV180697144
ODDB01001268
[ODDB] human metagenome; G_DNA_Tongue dorsum
366
441
+
Trp
CCA
[ENA]
¢þ
>WENV180697119
ODDB01000061
[ODDB] human metagenome; G_DNA_Tongue dorsum
381
311
-
Met
CAT
[ENA]
¢þ
>WENV180697124
ODDB01000316
[ODDB] human metagenome; G_DNA_Tongue dorsum
384
458
+
Asp
GTC
[ENA]
¢þ
>WENV180697154
ODDB01001853
[ODDB] human metagenome; G_DNA_Tongue dorsum
440
358
-
Tyr
GTA
[ENA]
¢þ
>WENV180697147
ODDB01001403
[ODDB] human metagenome; G_DNA_Tongue dorsum
452
380
-
Gln
CTG
[ENA]
¢þ
>WENV180697138
ODDB01001011
[ODDB] human metagenome; G_DNA_Tongue dorsum
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180697140
ODDB01001097
[ODDB] human metagenome; G_DNA_Tongue dorsum
484
557
+
Asn
GTT
[ENA]
¢þ
>WENV180697152
ODDB01001663
[ODDB] human metagenome; G_DNA_Tongue dorsum
492
407
-
Ser
GGA
[ENA]
¢þ
>WENV180697143
ODDB01001199
[ODDB] human metagenome; G_DNA_Tongue dorsum
496
570
+
Met
CAT
[ENA]
¢þ
>WENV180697125
ODDB01000316
[ODDB] human metagenome; G_DNA_Tongue dorsum
519
594
+
Phe
GAA
[ENA]
¢þ
>WENV180697127
ODDB01000353
[ODDB] human metagenome; G_DNA_Tongue dorsum
529
604
+
Lys
TTT
[ENA]
¢þ
>WENV180697150
ODDB01001520
[ODDB] human metagenome; G_DNA_Tongue dorsum
545
470
-
Asn
GTT
[ENA]
¢þ
>WENV180697117
ODDB01000059
[ODDB] human metagenome; G_DNA_Tongue dorsum
548
618
+
Val
TAC
[ENA]
¢þ
>WENV180697134
ODDB01000587
[ODDB] human metagenome; G_DNA_Tongue dorsum
555
481
-
Lys
TTT
[ENA]
¢þ
>WENV180697132
ODDB01000538
[ODDB] human metagenome; G_DNA_Tongue dorsum
632
715
+
Leu
TAG
[ENA]
¢þ
>WENV180697131
ODDB01000494
[ODDB] human metagenome; G_DNA_Tongue dorsum
709
782
+
Ala
GGC
[ENA]
¢þ
>WENV180697133
ODDB01000553
[ODDB] human metagenome; G_DNA_Tongue dorsum
815
890
+
His
GTG
[ENA]
¢þ
>WENV180697122
ODDB01000151
[ODDB] human metagenome; G_DNA_Tongue dorsum
941
1016
+
Arg
TCT
[ENA]
¢þ
>WENV180697130
ODDB01000482
[ODDB] human metagenome; G_DNA_Tongue dorsum
1069
996
-
Arg
CCT
[ENA]
¢þ
>WENV180697128
ODDB01000353
[ODDB] human metagenome; G_DNA_Tongue dorsum
1209
1136
-
Thr
TGT
[ENA]
¢þ
>WENV180697126
ODDB01000318
[ODDB] human metagenome; G_DNA_Tongue dorsum
1263
1188
-
Ala
TGC
[ENA]
¢þ
>WENV180697123
ODDB01000219
[ODDB] human metagenome; G_DNA_Tongue dorsum
1359
1284
-
Thr
CGT
[ENA]
¢þ
>WENV180697118
ODDB01000061
[ODDB] human metagenome; G_DNA_Tongue dorsum
1607
1680
+
His
GTG
[ENA]
¢þ
>WENV180697115
ODDB01000038
[ODDB] human metagenome; G_DNA_Tongue dorsum
1632
1716
+
Leu
TAG
[ENA]
¢þ
>WENV180697121
ODDB01000143
[ODDB] human metagenome; G_DNA_Tongue dorsum
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180697120
ODDB01000063
[ODDB] human metagenome; G_DNA_Tongue dorsum
1966
2053
+
Ser
CGA
[ENA]
¢þ
>WENV180697116
ODDB01000038
[ODDB] human metagenome; G_DNA_Tongue dorsum
2093
2168
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK