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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[ODDD] human metagenome; G_DNA_Posterior fornix
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180697288
ODDD01006125
[ODDD] human metagenome; G_DNA_Posterior fornix
31
104
+
Val
CAC
[ENA]
¢þ
>WENV180697298
ODDD01009834
[ODDD] human metagenome; G_DNA_Posterior fornix
33
106
+
Gln
TTG
[ENA]
¢þ
>WENV180697280
ODDD01002415
[ODDD] human metagenome; G_DNA_Posterior fornix
36
108
+
Val
GAC
[ENA]
¢þ
>WENV180697290
ODDD01006723
[ODDD] human metagenome; G_DNA_Posterior fornix
43
117
+
Glu
TTC
[ENA]
¢þ
>WENV180697265
ODDD01001199
[ODDD] human metagenome; G_DNA_Posterior fornix
75
157
+
Tyr
GTA
[ENA]
¢þ
>WENV180697275
ODDD01001582
[ODDD] human metagenome; G_DNA_Posterior fornix
81
7
-
Val
TAC
[ENA]
¢þ
>WENV180697295
ODDD01008646
[ODDD] human metagenome; G_DNA_Posterior fornix
92
167
+
Thr
CGT
[ENA]
¢þ
>WENV180697297
ODDD01009597
[ODDD] human metagenome; G_DNA_Posterior fornix
101
25
-
fMet
CAT
[ENA]
¢þ
>WENV180697283
ODDD01002634
[ODDD] human metagenome; G_DNA_Posterior fornix
101
28
-
Arg
ACG
[ENA]
¢þ
>WENV180697294
ODDD01008183
[ODDD] human metagenome; G_DNA_Posterior fornix
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180697299
ODDD01009834
[ODDD] human metagenome; G_DNA_Posterior fornix
118
190
+
Cys
GCA
[ENA]
¢þ
>WENV180697261
ODDD01000726
[ODDD] human metagenome; G_DNA_Posterior fornix
120
45
-
Glu
TTC
[ENA]
¢þ
>WENV180697291
ODDD01006723
[ODDD] human metagenome; G_DNA_Posterior fornix
122
197
+
Val
TAC
[ENA]
¢þ
>WENV180697270
ODDD01001346
[ODDD] human metagenome; G_DNA_Posterior fornix
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180697238
ODDD01000023
[ODDD] human metagenome; G_DNA_Posterior fornix
135
207
+
Asn
GTT
[ENA]
¢þ
>WENV180697292
ODDD01007775
[ODDD] human metagenome; G_DNA_Posterior fornix
138
64
-
Pro
GGG
[ENA]
¢þ
>WENV180697296
ODDD01008728
[ODDD] human metagenome; G_DNA_Posterior fornix
146
73
-
Gly
TCC
[ENA]
¢þ
>WENV180697277
ODDD01001721
[ODDD] human metagenome; G_DNA_Posterior fornix
173
247
+
Ala
TGC
[ENA]
¢þ
>WENV180697282
ODDD01002602
[ODDD] human metagenome; G_DNA_Posterior fornix
178
253
+
Thr
TGT
[ENA]
¢þ
>WENV180697289
ODDD01006503
[ODDD] human metagenome; G_DNA_Posterior fornix
180
88
-
Ser
TGA
[ENA]
¢þ
>WENV180697253
ODDD01000429
[ODDD] human metagenome; G_DNA_Posterior fornix
196
122
-
Ala
TGC
[ENA]
¢þ
>WENV180697293
ODDD01008183
[ODDD] human metagenome; G_DNA_Posterior fornix
211
123
-
Leu
TAA
[ENA]
¢þ
>WENV180697263
ODDD01001032
[ODDD] human metagenome; G_DNA_Posterior fornix
217
290
+
Trp
CCA
[ENA]
¢þ
>WENV180697287
ODDD01003947
[ODDD] human metagenome; G_DNA_Posterior fornix
226
142
-
Leu
TAG
[ENA]
¢þ
>WENV180697269
ODDD01001346
[ODDD] human metagenome; G_DNA_Posterior fornix
230
157
-
Gly
GCC
[ENA]
¢þ
>WENV180697285
ODDD01003389
[ODDD] human metagenome; G_DNA_Posterior fornix
231
303
+
Thr
GGT
[ENA]
¢þ
>WENV180697286
ODDD01003907
[ODDD] human metagenome; G_DNA_Posterior fornix
234
310
+
Ile2
CAT
[ENA]
¢þ
>WENV180697272
ODDD01001403
[ODDD] human metagenome; G_DNA_Posterior fornix
244
169
-
Glu
CTC
[ENA]
¢þ
>WENV180697273
ODDD01001408
[ODDD] human metagenome; G_DNA_Posterior fornix
263
346
+
Leu
CAG
[ENA]
¢þ
>WENV180697260
ODDD01000726
[ODDD] human metagenome; G_DNA_Posterior fornix
274
199
-
Ala
GGC
[ENA]
¢þ
>WENV180697281
ODDD01002487
[ODDD] human metagenome; G_DNA_Posterior fornix
279
364
+
Ser
TGA
[ENA]
¢þ
>WENV180697284
ODDD01002917
[ODDD] human metagenome; G_DNA_Posterior fornix
296
370
+
Lys
CTT
[ENA]
¢þ
>WENV180697259
ODDD01000693
[ODDD] human metagenome; G_DNA_Posterior fornix
315
239
-
Pro
CGG
[ENA]
¢þ
>WENV180697279
ODDD01001853
[ODDD] human metagenome; G_DNA_Posterior fornix
334
249
-
Ser
TGA
[ENA]
¢þ
>WENV180697266
ODDD01001199
[ODDD] human metagenome; G_DNA_Posterior fornix
358
431
+
Thr
GGT
[ENA]
¢þ
>WENV180697268
ODDD01001268
[ODDD] human metagenome; G_DNA_Posterior fornix
366
441
+
Trp
CCA
[ENA]
¢þ
>WENV180697243
ODDD01000061
[ODDD] human metagenome; G_DNA_Posterior fornix
381
311
-
Met
CAT
[ENA]
¢þ
>WENV180697248
ODDD01000316
[ODDD] human metagenome; G_DNA_Posterior fornix
384
458
+
Asp
GTC
[ENA]
¢þ
>WENV180697278
ODDD01001853
[ODDD] human metagenome; G_DNA_Posterior fornix
440
358
-
Tyr
GTA
[ENA]
¢þ
>WENV180697271
ODDD01001403
[ODDD] human metagenome; G_DNA_Posterior fornix
452
380
-
Gln
CTG
[ENA]
¢þ
>WENV180697262
ODDD01001011
[ODDD] human metagenome; G_DNA_Posterior fornix
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180697264
ODDD01001097
[ODDD] human metagenome; G_DNA_Posterior fornix
484
557
+
Asn
GTT
[ENA]
¢þ
>WENV180697276
ODDD01001663
[ODDD] human metagenome; G_DNA_Posterior fornix
492
407
-
Ser
GGA
[ENA]
¢þ
>WENV180697267
ODDD01001199
[ODDD] human metagenome; G_DNA_Posterior fornix
496
570
+
Met
CAT
[ENA]
¢þ
>WENV180697249
ODDD01000316
[ODDD] human metagenome; G_DNA_Posterior fornix
519
594
+
Phe
GAA
[ENA]
¢þ
>WENV180697251
ODDD01000353
[ODDD] human metagenome; G_DNA_Posterior fornix
529
604
+
Lys
TTT
[ENA]
¢þ
>WENV180697274
ODDD01001520
[ODDD] human metagenome; G_DNA_Posterior fornix
545
470
-
Asn
GTT
[ENA]
¢þ
>WENV180697241
ODDD01000059
[ODDD] human metagenome; G_DNA_Posterior fornix
548
618
+
Val
TAC
[ENA]
¢þ
>WENV180697258
ODDD01000587
[ODDD] human metagenome; G_DNA_Posterior fornix
555
481
-
Lys
TTT
[ENA]
¢þ
>WENV180697256
ODDD01000538
[ODDD] human metagenome; G_DNA_Posterior fornix
632
715
+
Leu
TAG
[ENA]
¢þ
>WENV180697255
ODDD01000494
[ODDD] human metagenome; G_DNA_Posterior fornix
709
782
+
Ala
GGC
[ENA]
¢þ
>WENV180697257
ODDD01000553
[ODDD] human metagenome; G_DNA_Posterior fornix
815
890
+
His
GTG
[ENA]
¢þ
>WENV180697246
ODDD01000151
[ODDD] human metagenome; G_DNA_Posterior fornix
941
1016
+
Arg
TCT
[ENA]
¢þ
>WENV180697254
ODDD01000482
[ODDD] human metagenome; G_DNA_Posterior fornix
1069
996
-
Arg
CCT
[ENA]
¢þ
>WENV180697252
ODDD01000353
[ODDD] human metagenome; G_DNA_Posterior fornix
1209
1136
-
Thr
TGT
[ENA]
¢þ
>WENV180697250
ODDD01000318
[ODDD] human metagenome; G_DNA_Posterior fornix
1263
1188
-
Ala
TGC
[ENA]
¢þ
>WENV180697247
ODDD01000219
[ODDD] human metagenome; G_DNA_Posterior fornix
1359
1284
-
Thr
CGT
[ENA]
¢þ
>WENV180697242
ODDD01000061
[ODDD] human metagenome; G_DNA_Posterior fornix
1607
1680
+
His
GTG
[ENA]
¢þ
>WENV180697239
ODDD01000038
[ODDD] human metagenome; G_DNA_Posterior fornix
1632
1716
+
Leu
TAG
[ENA]
¢þ
>WENV180697245
ODDD01000143
[ODDD] human metagenome; G_DNA_Posterior fornix
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180697244
ODDD01000063
[ODDD] human metagenome; G_DNA_Posterior fornix
1966
2053
+
Ser
CGA
[ENA]
¢þ
>WENV180697240
ODDD01000038
[ODDD] human metagenome; G_DNA_Posterior fornix
2093
2168
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK