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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[ODET] human metagenome; G_DNA_Supragingival plaque
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180706720
ODET01006125
[ODET] human metagenome; G_DNA_Supragingival plaque
31
104
+
Val
CAC
[ENA]
¢þ
>WENV180706730
ODET01009834
[ODET] human metagenome; G_DNA_Supragingival plaque
33
106
+
Gln
TTG
[ENA]
¢þ
>WENV180706712
ODET01002415
[ODET] human metagenome; G_DNA_Supragingival plaque
36
108
+
Val
GAC
[ENA]
¢þ
>WENV180706722
ODET01006723
[ODET] human metagenome; G_DNA_Supragingival plaque
43
117
+
Glu
TTC
[ENA]
¢þ
>WENV180706697
ODET01001199
[ODET] human metagenome; G_DNA_Supragingival plaque
75
157
+
Tyr
GTA
[ENA]
¢þ
>WENV180706707
ODET01001582
[ODET] human metagenome; G_DNA_Supragingival plaque
81
7
-
Val
TAC
[ENA]
¢þ
>WENV180706727
ODET01008646
[ODET] human metagenome; G_DNA_Supragingival plaque
92
167
+
Thr
CGT
[ENA]
¢þ
>WENV180706729
ODET01009597
[ODET] human metagenome; G_DNA_Supragingival plaque
101
25
-
fMet
CAT
[ENA]
¢þ
>WENV180706715
ODET01002634
[ODET] human metagenome; G_DNA_Supragingival plaque
101
28
-
Arg
ACG
[ENA]
¢þ
>WENV180706726
ODET01008183
[ODET] human metagenome; G_DNA_Supragingival plaque
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180706731
ODET01009834
[ODET] human metagenome; G_DNA_Supragingival plaque
118
190
+
Cys
GCA
[ENA]
¢þ
>WENV180706693
ODET01000726
[ODET] human metagenome; G_DNA_Supragingival plaque
120
45
-
Glu
TTC
[ENA]
¢þ
>WENV180706723
ODET01006723
[ODET] human metagenome; G_DNA_Supragingival plaque
122
197
+
Val
TAC
[ENA]
¢þ
>WENV180706702
ODET01001346
[ODET] human metagenome; G_DNA_Supragingival plaque
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180706670
ODET01000023
[ODET] human metagenome; G_DNA_Supragingival plaque
135
207
+
Asn
GTT
[ENA]
¢þ
>WENV180706724
ODET01007775
[ODET] human metagenome; G_DNA_Supragingival plaque
138
64
-
Pro
GGG
[ENA]
¢þ
>WENV180706728
ODET01008728
[ODET] human metagenome; G_DNA_Supragingival plaque
146
73
-
Gly
TCC
[ENA]
¢þ
>WENV180706709
ODET01001721
[ODET] human metagenome; G_DNA_Supragingival plaque
173
247
+
Ala
TGC
[ENA]
¢þ
>WENV180706714
ODET01002602
[ODET] human metagenome; G_DNA_Supragingival plaque
178
253
+
Thr
TGT
[ENA]
¢þ
>WENV180706721
ODET01006503
[ODET] human metagenome; G_DNA_Supragingival plaque
180
88
-
Ser
TGA
[ENA]
¢þ
>WENV180706685
ODET01000429
[ODET] human metagenome; G_DNA_Supragingival plaque
196
122
-
Ala
TGC
[ENA]
¢þ
>WENV180706725
ODET01008183
[ODET] human metagenome; G_DNA_Supragingival plaque
211
123
-
Leu
TAA
[ENA]
¢þ
>WENV180706695
ODET01001032
[ODET] human metagenome; G_DNA_Supragingival plaque
217
290
+
Trp
CCA
[ENA]
¢þ
>WENV180706719
ODET01003947
[ODET] human metagenome; G_DNA_Supragingival plaque
226
142
-
Leu
TAG
[ENA]
¢þ
>WENV180706701
ODET01001346
[ODET] human metagenome; G_DNA_Supragingival plaque
230
157
-
Gly
GCC
[ENA]
¢þ
>WENV180706717
ODET01003389
[ODET] human metagenome; G_DNA_Supragingival plaque
231
303
+
Thr
GGT
[ENA]
¢þ
>WENV180706718
ODET01003907
[ODET] human metagenome; G_DNA_Supragingival plaque
234
310
+
Ile2
CAT
[ENA]
¢þ
>WENV180706704
ODET01001403
[ODET] human metagenome; G_DNA_Supragingival plaque
244
169
-
Glu
CTC
[ENA]
¢þ
>WENV180706705
ODET01001408
[ODET] human metagenome; G_DNA_Supragingival plaque
263
346
+
Leu
CAG
[ENA]
¢þ
>WENV180706692
ODET01000726
[ODET] human metagenome; G_DNA_Supragingival plaque
274
199
-
Ala
GGC
[ENA]
¢þ
>WENV180706713
ODET01002487
[ODET] human metagenome; G_DNA_Supragingival plaque
279
364
+
Ser
TGA
[ENA]
¢þ
>WENV180706716
ODET01002917
[ODET] human metagenome; G_DNA_Supragingival plaque
296
370
+
Lys
CTT
[ENA]
¢þ
>WENV180706691
ODET01000693
[ODET] human metagenome; G_DNA_Supragingival plaque
315
239
-
Pro
CGG
[ENA]
¢þ
>WENV180706711
ODET01001853
[ODET] human metagenome; G_DNA_Supragingival plaque
334
249
-
Ser
TGA
[ENA]
¢þ
>WENV180706698
ODET01001199
[ODET] human metagenome; G_DNA_Supragingival plaque
358
431
+
Thr
GGT
[ENA]
¢þ
>WENV180706700
ODET01001268
[ODET] human metagenome; G_DNA_Supragingival plaque
366
441
+
Trp
CCA
[ENA]
¢þ
>WENV180706675
ODET01000061
[ODET] human metagenome; G_DNA_Supragingival plaque
381
311
-
Met
CAT
[ENA]
¢þ
>WENV180706680
ODET01000316
[ODET] human metagenome; G_DNA_Supragingival plaque
384
458
+
Asp
GTC
[ENA]
¢þ
>WENV180706710
ODET01001853
[ODET] human metagenome; G_DNA_Supragingival plaque
440
358
-
Tyr
GTA
[ENA]
¢þ
>WENV180706703
ODET01001403
[ODET] human metagenome; G_DNA_Supragingival plaque
452
380
-
Gln
CTG
[ENA]
¢þ
>WENV180706694
ODET01001011
[ODET] human metagenome; G_DNA_Supragingival plaque
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180706696
ODET01001097
[ODET] human metagenome; G_DNA_Supragingival plaque
484
557
+
Asn
GTT
[ENA]
¢þ
>WENV180706708
ODET01001663
[ODET] human metagenome; G_DNA_Supragingival plaque
492
407
-
Ser
GGA
[ENA]
¢þ
>WENV180706699
ODET01001199
[ODET] human metagenome; G_DNA_Supragingival plaque
496
570
+
Met
CAT
[ENA]
¢þ
>WENV180706681
ODET01000316
[ODET] human metagenome; G_DNA_Supragingival plaque
519
594
+
Phe
GAA
[ENA]
¢þ
>WENV180706683
ODET01000353
[ODET] human metagenome; G_DNA_Supragingival plaque
529
604
+
Lys
TTT
[ENA]
¢þ
>WENV180706706
ODET01001520
[ODET] human metagenome; G_DNA_Supragingival plaque
545
470
-
Asn
GTT
[ENA]
¢þ
>WENV180706673
ODET01000059
[ODET] human metagenome; G_DNA_Supragingival plaque
548
618
+
Val
TAC
[ENA]
¢þ
>WENV180706690
ODET01000587
[ODET] human metagenome; G_DNA_Supragingival plaque
555
481
-
Lys
TTT
[ENA]
¢þ
>WENV180706688
ODET01000538
[ODET] human metagenome; G_DNA_Supragingival plaque
632
715
+
Leu
TAG
[ENA]
¢þ
>WENV180706687
ODET01000494
[ODET] human metagenome; G_DNA_Supragingival plaque
709
782
+
Ala
GGC
[ENA]
¢þ
>WENV180706689
ODET01000553
[ODET] human metagenome; G_DNA_Supragingival plaque
815
890
+
His
GTG
[ENA]
¢þ
>WENV180706678
ODET01000151
[ODET] human metagenome; G_DNA_Supragingival plaque
941
1016
+
Arg
TCT
[ENA]
¢þ
>WENV180706686
ODET01000482
[ODET] human metagenome; G_DNA_Supragingival plaque
1069
996
-
Arg
CCT
[ENA]
¢þ
>WENV180706684
ODET01000353
[ODET] human metagenome; G_DNA_Supragingival plaque
1209
1136
-
Thr
TGT
[ENA]
¢þ
>WENV180706682
ODET01000318
[ODET] human metagenome; G_DNA_Supragingival plaque
1263
1188
-
Ala
TGC
[ENA]
¢þ
>WENV180706679
ODET01000219
[ODET] human metagenome; G_DNA_Supragingival plaque
1359
1284
-
Thr
CGT
[ENA]
¢þ
>WENV180706674
ODET01000061
[ODET] human metagenome; G_DNA_Supragingival plaque
1607
1680
+
His
GTG
[ENA]
¢þ
>WENV180706671
ODET01000038
[ODET] human metagenome; G_DNA_Supragingival plaque
1632
1716
+
Leu
TAG
[ENA]
¢þ
>WENV180706677
ODET01000143
[ODET] human metagenome; G_DNA_Supragingival plaque
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180706676
ODET01000063
[ODET] human metagenome; G_DNA_Supragingival plaque
1966
2053
+
Ser
CGA
[ENA]
¢þ
>WENV180706672
ODET01000038
[ODET] human metagenome; G_DNA_Supragingival plaque
2093
2168
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK