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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[ODFO] human metagenome; G_DNA_Buccal mucosa
HIT:
69 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180711480
ODFO01002683
[ODFO] human metagenome; G_DNA_Buccal mucosa
21
95
+
Thr
GGT
[ENA]
¢þ
>WENV180711483
ODFO01003530
[ODFO] human metagenome; G_DNA_Buccal mucosa
21
96
+
Gly
GCC
[ENA]
¢þ
>WENV180711490
ODFO01007589
[ODFO] human metagenome; G_DNA_Buccal mucosa
37
112
+
Asn
GTT
[ENA]
¢þ
>WENV180711503
ODFO01014343
[ODFO] human metagenome; G_DNA_Buccal mucosa
37
113
+
Pro
CGG
[ENA]
¢þ
>WENV180711468
ODFO01000241
[ODFO] human metagenome; G_DNA_Buccal mucosa
59
131
+
Val
TAC
[ENA]
¢þ
>WENV180711457
ODFO01000075
[ODFO] human metagenome; G_DNA_Buccal mucosa
60
133
+
Asn
GTT
[ENA]
¢þ
>WENV180711442
ODFO01000014
[ODFO] human metagenome; G_DNA_Buccal mucosa
64
146
+
Tyr
GTA
[ENA]
¢þ
>WENV180711499
ODFO01011161
[ODFO] human metagenome; G_DNA_Buccal mucosa
70
159
+
Ser
CGA
[ENA]
¢þ
>WENV180711501
ODFO01011811
[ODFO] human metagenome; G_DNA_Buccal mucosa
81
155
+
Glu
TTC
[ENA]
¢þ
>WENV180711478
ODFO01001871
[ODFO] human metagenome; G_DNA_Buccal mucosa
91
167
+
Met
CAT
[ENA]
¢þ
>WENV180711502
ODFO01014275
[ODFO] human metagenome; G_DNA_Buccal mucosa
103
179
+
Gln
TTG
[ENA]
¢þ
>WENV180711484
ODFO01003530
[ODFO] human metagenome; G_DNA_Buccal mucosa
104
177
+
Cys
GCA
[ENA]
¢þ
>WENV180711498
ODFO01010919
[ODFO] human metagenome; G_DNA_Buccal mucosa
112
184
+
Thr
CGT
[ENA]
¢þ
>WENV180711487
ODFO01004900
[ODFO] human metagenome; G_DNA_Buccal mucosa
114
39
-
Ala
TGC
[ENA]
¢þ
>WENV180711496
ODFO01010727
[ODFO] human metagenome; G_DNA_Buccal mucosa
115
40
-
Trp
CCA
[ENA]
¢þ
>WENV180711497
ODFO01010729
[ODFO] human metagenome; G_DNA_Buccal mucosa
117
42
-
Val
TAC
[ENA]
¢þ
>WENV180711482
ODFO01003516
[ODFO] human metagenome; G_DNA_Buccal mucosa
120
208
+
Ser
GGA
[ENA]
¢þ
>WENV180711500
ODFO01011613
[ODFO] human metagenome; G_DNA_Buccal mucosa
121
203
+
Leu
CAG
[ENA]
¢þ
>WENV180711493
ODFO01010179
[ODFO] human metagenome; G_DNA_Buccal mucosa
125
49
-
Met
CAT
[ENA]
¢þ
>WENV180711492
ODFO01008672
[ODFO] human metagenome; G_DNA_Buccal mucosa
133
58
-
Thr
TGT
[ENA]
¢þ
>WENV180711469
ODFO01000241
[ODFO] human metagenome; G_DNA_Buccal mucosa
134
206
+
Asp
GTC
[ENA]
¢þ
>WENV180711443
ODFO01000014
[ODFO] human metagenome; G_DNA_Buccal mucosa
149
221
+
Trp
CCA
[ENA]
¢þ
>WENV180711504
ODFO01014400
[ODFO] human metagenome; G_DNA_Buccal mucosa
150
74
-
Ile2
CAT
[ENA]
¢þ
>WENV180711505
ODFO01014475
[ODFO] human metagenome; G_DNA_Buccal mucosa
158
83
-
Val
TAC
[ENA]
¢þ
>WENV180711494
ODFO01010582
[ODFO] human metagenome; G_DNA_Buccal mucosa
159
84
-
Lys
TTT
[ENA]
¢þ
>WENV180711481
ODFO01003236
[ODFO] human metagenome; G_DNA_Buccal mucosa
163
257
+
SeC
TCA
[ENA]
¢þ
>WENV180711488
ODFO01005131
[ODFO] human metagenome; G_DNA_Buccal mucosa
168
93
-
Ile2
CAT
[ENA]
¢þ
>WENV180711479
ODFO01001871
[ODFO] human metagenome; G_DNA_Buccal mucosa
174
249
+
Ala
GGC
[ENA]
¢þ
>WENV180711506
ODFO01014786
[ODFO] human metagenome; G_DNA_Buccal mucosa
190
115
-
Val
TAC
[ENA]
¢þ
>WENV180711486
ODFO01004900
[ODFO] human metagenome; G_DNA_Buccal mucosa
196
120
-
Ile
GAT
[ENA]
¢þ
>WENV180711489
ODFO01006454
[ODFO] human metagenome; G_DNA_Buccal mucosa
202
127
-
Lys
TTT
[ENA]
¢þ
>WENV180711485
ODFO01003530
[ODFO] human metagenome; G_DNA_Buccal mucosa
206
292
+
Leu
TAA
[ENA]
¢þ
>WENV180711495
ODFO01010727
[ODFO] human metagenome; G_DNA_Buccal mucosa
207
131
-
Asp
GTC
[ENA]
¢þ
>WENV180711491
ODFO01008672
[ODFO] human metagenome; G_DNA_Buccal mucosa
213
138
-
Phe
GAA
[ENA]
¢þ
>WENV180711470
ODFO01000241
[ODFO] human metagenome; G_DNA_Buccal mucosa
231
303
+
Lys
TTT
[ENA]
¢þ
>WENV180711444
ODFO01000014
[ODFO] human metagenome; G_DNA_Buccal mucosa
234
308
+
His
GTG
[ENA]
¢þ
>WENV180711459
ODFO01000081
[ODFO] human metagenome; G_DNA_Buccal mucosa
304
232
-
Thr
GGT
[ENA]
¢þ
>WENV180711471
ODFO01000241
[ODFO] human metagenome; G_DNA_Buccal mucosa
308
391
+
Leu
TAG
[ENA]
¢þ
>WENV180711445
ODFO01000014
[ODFO] human metagenome; G_DNA_Buccal mucosa
320
393
+
Gln
TTG
[ENA]
¢þ
>WENV180711446
ODFO01000014
[ODFO] human metagenome; G_DNA_Buccal mucosa
401
486
+
Leu
CAA
[ENA]
¢þ
>WENV180711472
ODFO01000241
[ODFO] human metagenome; G_DNA_Buccal mucosa
409
481
+
Thr
TGT
[ENA]
¢þ
>WENV180711473
ODFO01000241
[ODFO] human metagenome; G_DNA_Buccal mucosa
504
575
+
Gly
GCC
[ENA]
¢þ
>WENV180711474
ODFO01000241
[ODFO] human metagenome; G_DNA_Buccal mucosa
583
668
+
Leu
TAA
[ENA]
¢þ
>WENV180711475
ODFO01000241
[ODFO] human metagenome; G_DNA_Buccal mucosa
680
753
+
Arg
ACG
[ENA]
¢þ
>WENV180711448
ODFO01000021
[ODFO] human metagenome; G_DNA_Buccal mucosa
738
667
-
Gln
TTG
[ENA]
¢þ
>WENV180711476
ODFO01000241
[ODFO] human metagenome; G_DNA_Buccal mucosa
768
843
+
Pro
TGG
[ENA]
¢þ
>WENV180711477
ODFO01000253
[ODFO] human metagenome; G_DNA_Buccal mucosa
776
687
-
Ser
TGA
[ENA]
¢þ
>WENV180711447
ODFO01000021
[ODFO] human metagenome; G_DNA_Buccal mucosa
828
748
-
Tyr
GTA
[ENA]
¢þ
>WENV180711467
ODFO01000088
[ODFO] human metagenome; G_DNA_Buccal mucosa
1769
1680
-
Ser
GCT
[ENA]
¢þ
>WENV180711466
ODFO01000088
[ODFO] human metagenome; G_DNA_Buccal mucosa
1849
1774
-
Ile
GAT
[ENA]
¢þ
>WENV180711465
ODFO01000088
[ODFO] human metagenome; G_DNA_Buccal mucosa
1953
1883
-
Gly
TCC
[ENA]
¢þ
>WENV180711458
ODFO01000078
[ODFO] human metagenome; G_DNA_Buccal mucosa
1990
2065
+
Glu
TTC
[ENA]
¢þ
>WENV180711464
ODFO01000088
[ODFO] human metagenome; G_DNA_Buccal mucosa
2046
1974
-
Phe
GAA
[ENA]
¢þ
>WENV180711463
ODFO01000088
[ODFO] human metagenome; G_DNA_Buccal mucosa
2123
2050
-
fMet
CAT
[ENA]
¢þ
>WENV180711456
ODFO01000073
[ODFO] human metagenome; G_DNA_Buccal mucosa
2141
2067
-
Ala
TGC
[ENA]
¢þ
>WENV180711452
ODFO01000037
[ODFO] human metagenome; G_DNA_Buccal mucosa
2207
2118
-
Ser
GGA
[ENA]
¢þ
>WENV180711462
ODFO01000088
[ODFO] human metagenome; G_DNA_Buccal mucosa
2223
2134
-
Ser
TGA
[ENA]
¢þ
>WENV180711461
ODFO01000088
[ODFO] human metagenome; G_DNA_Buccal mucosa
2310
2235
-
Ile2
CAT
[ENA]
¢þ
>WENV180711460
ODFO01000088
[ODFO] human metagenome; G_DNA_Buccal mucosa
2397
2322
-
Met
CAT
[ENA]
¢þ
>WENV180711455
ODFO01000073
[ODFO] human metagenome; G_DNA_Buccal mucosa
4052
3979
-
Glu
TTC
[ENA]
¢þ
>WENV180711454
ODFO01000046
[ODFO] human metagenome; G_DNA_Buccal mucosa
11083
11155
+
Cys
GCA
[ENA]
¢þ
>WENV180711441
ODFO01000010
[ODFO] human metagenome; G_DNA_Buccal mucosa
11645
11574
-
Arg
CCT
[ENA]
¢þ
>WENV180711453
ODFO01000039
[ODFO] human metagenome; G_DNA_Buccal mucosa
13944
14029
+
Leu
AAG
[ENA]
¢þ
>WENV180711451
ODFO01000031
[ODFO] human metagenome; G_DNA_Buccal mucosa
15843
15770
-
Asn
GTT
[ENA]
¢þ
>WENV180711450
ODFO01000031
[ODFO] human metagenome; G_DNA_Buccal mucosa
15920
15849
-
Glu
TTC
[ENA]
¢þ
>WENV180711449
ODFO01000031
[ODFO] human metagenome; G_DNA_Buccal mucosa
18420
18347
-
Arg
TCT
[ENA]
¢þ
>WENV180711439
ODFO01000009
[ODFO] human metagenome; G_DNA_Buccal mucosa
52428
52503
+
Lys
CTT
[ENA]
¢þ
>WENV180711440
ODFO01000009
[ODFO] human metagenome; G_DNA_Buccal mucosa
53426
53499
+
Lys
CTT
[ENA]
¢þ
>WENV180711438
ODFO01000004
[ODFO] human metagenome; G_DNA_Buccal mucosa
74879
74806
-
Arg
CCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK