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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[ODFY] human metagenome; G_DNA_Anterior nares
HIT:
48 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180716357
ODFY01001228
[ODFY] human metagenome; G_DNA_Anterior nares
130
57
-
fMet
CAT
[ENA]
¢þ
>WENV180716349
ODFY01000221
[ODFY] human metagenome; G_DNA_Anterior nares
145
219
+
Ile
GAT
[ENA]
¢þ
>WENV180716358
ODFY01002315
[ODFY] human metagenome; G_DNA_Anterior nares
166
91
-
Lys
CTT
[ENA]
¢þ
>WENV180716356
ODFY01001228
[ODFY] human metagenome; G_DNA_Anterior nares
229
140
-
Ser
TGA
[ENA]
¢þ
>WENV180716355
ODFY01000573
[ODFY] human metagenome; G_DNA_Anterior nares
281
362
+
Tyr
GTA
[ENA]
¢þ
>WENV180716343
ODFY01000119
[ODFY] human metagenome; G_DNA_Anterior nares
318
241
-
Glu
CTC
[ENA]
¢þ
>WENV180716350
ODFY01000280
[ODFY] human metagenome; G_DNA_Anterior nares
387
462
+
Arg
TCT
[ENA]
¢þ
>WENV180716353
ODFY01000371
[ODFY] human metagenome; G_DNA_Anterior nares
430
356
-
Met
CAT
[ENA]
¢þ
>WENV180716334
ODFY01000052
[ODFY] human metagenome; G_DNA_Anterior nares
522
449
-
Val
CAC
[ENA]
¢þ
>WENV180716342
ODFY01000119
[ODFY] human metagenome; G_DNA_Anterior nares
525
453
-
Gln
CTG
[ENA]
¢þ
>WENV180716352
ODFY01000371
[ODFY] human metagenome; G_DNA_Anterior nares
568
495
-
Thr
GGT
[ENA]
¢þ
>WENV180716338
ODFY01000088
[ODFY] human metagenome; G_DNA_Anterior nares
748
675
-
Ala
CGC
[ENA]
¢þ
>WENV180716351
ODFY01000371
[ODFY] human metagenome; G_DNA_Anterior nares
852
770
-
Tyr
GTA
[ENA]
¢þ
>WENV180716331
ODFY01000052
[ODFY] human metagenome; G_DNA_Anterior nares
901
974
+
Gly
GCC
[ENA]
¢þ
>WENV180716332
ODFY01000052
[ODFY] human metagenome; G_DNA_Anterior nares
1002
1073
+
Cys
GCA
[ENA]
¢þ
>WENV180716333
ODFY01000052
[ODFY] human metagenome; G_DNA_Anterior nares
1074
1146
+
Val
GAC
[ENA]
¢þ
>WENV180716354
ODFY01000378
[ODFY] human metagenome; G_DNA_Anterior nares
1136
1223
+
Leu
GAG
[ENA]
¢þ
>WENV180716317
ODFY01000014
[ODFY] human metagenome; G_DNA_Anterior nares
1681
1756
+
His
GTG
[ENA]
¢þ
>WENV180716336
ODFY01000081
[ODFY] human metagenome; G_DNA_Anterior nares
1703
1629
-
Lys
CTT
[ENA]
¢þ
>WENV180716319
ODFY01000017
[ODFY] human metagenome; G_DNA_Anterior nares
2681
2606
-
Thr
TGT
[ENA]
¢þ
>WENV180716335
ODFY01000072
[ODFY] human metagenome; G_DNA_Anterior nares
2767
2839
+
Arg
CCG
[ENA]
¢þ
>WENV180716344
ODFY01000162
[ODFY] human metagenome; G_DNA_Anterior nares
2773
2690
-
Leu
TAG
[ENA]
¢þ
>WENV180716347
ODFY01000171
[ODFY] human metagenome; G_DNA_Anterior nares
3083
3008
-
Phe
GAA
[ENA]
¢þ
>WENV180716346
ODFY01000171
[ODFY] human metagenome; G_DNA_Anterior nares
3218
3144
-
Asp
GTC
[ENA]
¢þ
>WENV180716348
ODFY01000194
[ODFY] human metagenome; G_DNA_Anterior nares
3665
3738
+
Trp
CCA
[ENA]
¢þ
>WENV180716327
ODFY01000034
[ODFY] human metagenome; G_DNA_Anterior nares
3709
3792
+
Leu
CAG
[ENA]
¢þ
>WENV180716315
ODFY01000005
[ODFY] human metagenome; G_DNA_Anterior nares
3710
3637
-
Arg
ACG
[ENA]
¢þ
>WENV180716345
ODFY01000171
[ODFY] human metagenome; G_DNA_Anterior nares
3717
3643
-
Glu
TTC
[ENA]
¢þ
>WENV180716314
ODFY01000005
[ODFY] human metagenome; G_DNA_Anterior nares
4034
3944
-
Ser
GCT
[ENA]
¢þ
>WENV180716316
ODFY01000006
[ODFY] human metagenome; G_DNA_Anterior nares
5149
5223
+
Pro
GGG
[ENA]
¢þ
>WENV180716339
ODFY01000089
[ODFY] human metagenome; G_DNA_Anterior nares
5208
5295
+
Ser
CGA
[ENA]
¢þ
>WENV180716323
ODFY01000020
[ODFY] human metagenome; G_DNA_Anterior nares
6108
6035
-
Gly
TCC
[ENA]
¢þ
>WENV180716341
ODFY01000114
[ODFY] human metagenome; G_DNA_Anterior nares
7020
7093
+
Ala
GGC
[ENA]
¢þ
>WENV180716330
ODFY01000049
[ODFY] human metagenome; G_DNA_Anterior nares
7070
6996
-
Val
TAC
[ENA]
¢þ
>WENV180716340
ODFY01000094
[ODFY] human metagenome; G_DNA_Anterior nares
7079
7152
+
Asn
GTT
[ENA]
¢þ
>WENV180716326
ODFY01000031
[ODFY] human metagenome; G_DNA_Anterior nares
7174
7099
-
Thr
CGT
[ENA]
¢þ
>WENV180716325
ODFY01000024
[ODFY] human metagenome; G_DNA_Anterior nares
7510
7595
+
Ser
GGA
[ENA]
¢þ
>WENV180716337
ODFY01000088
[ODFY] human metagenome; G_DNA_Anterior nares
8273
8346
+
Arg
CCT
[ENA]
¢þ
>WENV180716322
ODFY01000020
[ODFY] human metagenome; G_DNA_Anterior nares
9189
9264
+
Pro
TGG
[ENA]
¢þ
>WENV180716329
ODFY01000046
[ODFY] human metagenome; G_DNA_Anterior nares
9448
9522
+
Ile2
CAT
[ENA]
¢þ
>WENV180716324
ODFY01000021
[ODFY] human metagenome; G_DNA_Anterior nares
9996
10075
+
Gln
TTG
[ENA]
¢þ
>WENV180716312
ODFY01000004
[ODFY] human metagenome; G_DNA_Anterior nares
11043
10970
-
Ala
TGC
[ENA]
¢þ
>WENV180716313
ODFY01000005
[ODFY] human metagenome; G_DNA_Anterior nares
11365
11280
-
Ser
TGA
[ENA]
¢þ
>WENV180716328
ODFY01000042
[ODFY] human metagenome; G_DNA_Anterior nares
12092
12016
-
Pro
CGG
[ENA]
¢þ
>WENV180716321
ODFY01000019
[ODFY] human metagenome; G_DNA_Anterior nares
12563
12490
-
Gly
CCC
[ENA]
¢þ
>WENV180716320
ODFY01000018
[ODFY] human metagenome; G_DNA_Anterior nares
13423
13499
+
fMet
CAT
[ENA]
¢þ
>WENV180716318
ODFY01000014
[ODFY] human metagenome; G_DNA_Anterior nares
17196
17122
-
Leu
TAA
[ENA]
¢þ
>WENV180716311
ODFY01000003
[ODFY] human metagenome; G_DNA_Anterior nares
24428
24344
-
Leu
CAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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