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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[ODJL] human metagenome; G_DNA_Posterior fornix
HIT:
46 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180810565
ODJL01001293
[ODJL] human metagenome; G_DNA_Posterior fornix
73
1
-
Asn
GTT
[ENA]
¢þ
>WENV180810543
ODJL01000014
[ODJL] human metagenome; G_DNA_Posterior fornix
80
8
-
Thr
GGT
[ENA]
¢þ
>WENV180810528
ODJL01000009
[ODJL] human metagenome; G_DNA_Posterior fornix
150
60
-
Ser
TGA
[ENA]
¢þ
>WENV180810557
ODJL01000061
[ODJL] human metagenome; G_DNA_Posterior fornix
161
86
-
Ile2
CAT
[ENA]
¢þ
>WENV180810564
ODJL01000217
[ODJL] human metagenome; G_DNA_Posterior fornix
186
111
-
Ala
TGC
[ENA]
¢þ
>WENV180810562
ODJL01000102
[ODJL] human metagenome; G_DNA_Posterior fornix
216
125
-
Ser
GCT
[ENA]
¢þ
>WENV180810556
ODJL01000061
[ODJL] human metagenome; G_DNA_Posterior fornix
245
170
-
Met
CAT
[ENA]
¢þ
>WENV180810527
ODJL01000009
[ODJL] human metagenome; G_DNA_Posterior fornix
260
187
-
Glu
TTC
[ENA]
¢þ
>WENV180810561
ODJL01000102
[ODJL] human metagenome; G_DNA_Posterior fornix
293
218
-
Ile
GAT
[ENA]
¢þ
>WENV180810563
ODJL01000217
[ODJL] human metagenome; G_DNA_Posterior fornix
295
222
-
Ile
GAT
[ENA]
¢þ
>WENV180810555
ODJL01000061
[ODJL] human metagenome; G_DNA_Posterior fornix
351
276
-
Pro
TGG
[ENA]
¢þ
>WENV180810554
ODJL01000061
[ODJL] human metagenome; G_DNA_Posterior fornix
429
354
-
Arg
ACG
[ENA]
¢þ
>WENV180810560
ODJL01000102
[ODJL] human metagenome; G_DNA_Posterior fornix
462
388
-
Phe
GAA
[ENA]
¢þ
>WENV180810553
ODJL01000061
[ODJL] human metagenome; G_DNA_Posterior fornix
523
437
-
Leu
TAA
[ENA]
¢þ
>WENV180810559
ODJL01000102
[ODJL] human metagenome; G_DNA_Posterior fornix
541
466
-
Asp
GTC
[ENA]
¢þ
>WENV180810552
ODJL01000061
[ODJL] human metagenome; G_DNA_Posterior fornix
607
536
-
Gly
GCC
[ENA]
¢þ
>WENV180810558
ODJL01000102
[ODJL] human metagenome; G_DNA_Posterior fornix
618
543
-
fMet
CAT
[ENA]
¢þ
>WENV180810551
ODJL01000061
[ODJL] human metagenome; G_DNA_Posterior fornix
692
618
-
Thr
TGT
[ENA]
¢þ
>WENV180810550
ODJL01000061
[ODJL] human metagenome; G_DNA_Posterior fornix
803
722
-
Leu
TAG
[ENA]
¢þ
>WENV180810549
ODJL01000061
[ODJL] human metagenome; G_DNA_Posterior fornix
891
817
-
Lys
TTT
[ENA]
¢þ
>WENV180810548
ODJL01000061
[ODJL] human metagenome; G_DNA_Posterior fornix
970
896
-
Val
TAC
[ENA]
¢þ
>WENV180810542
ODJL01000014
[ODJL] human metagenome; G_DNA_Posterior fornix
2969
2897
-
Thr
GGT
[ENA]
¢þ
>WENV180810521
ODJL01000001
[ODJL] human metagenome; G_DNA_Posterior fornix
3122
3051
-
Arg
CCG
[ENA]
¢þ
>WENV180810547
ODJL01000036
[ODJL] human metagenome; G_DNA_Posterior fornix
3180
3256
+
Arg
TCT
[ENA]
¢þ
>WENV180810540
ODJL01000012
[ODJL] human metagenome; G_DNA_Posterior fornix
5016
4941
-
Arg
ACG
[ENA]
¢þ
>WENV180810539
ODJL01000012
[ODJL] human metagenome; G_DNA_Posterior fornix
5149
5077
-
Thr
CGT
[ENA]
¢þ
>WENV180810535
ODJL01000012
[ODJL] human metagenome; G_DNA_Posterior fornix
7348
7419
+
Gln
TTG
[ENA]
¢þ
>WENV180810536
ODJL01000012
[ODJL] human metagenome; G_DNA_Posterior fornix
7767
7850
+
Tyr
GTA
[ENA]
¢þ
>WENV180810537
ODJL01000012
[ODJL] human metagenome; G_DNA_Posterior fornix
7854
7927
+
Gln
TTG
[ENA]
¢þ
>WENV180810545
ODJL01000019
[ODJL] human metagenome; G_DNA_Posterior fornix
9017
8945
-
Gln
CTG
[ENA]
¢þ
>WENV180810544
ODJL01000019
[ODJL] human metagenome; G_DNA_Posterior fornix
9095
9022
-
Glu
CTC
[ENA]
¢þ
>WENV180810546
ODJL01000021
[ODJL] human metagenome; G_DNA_Posterior fornix
14573
14644
+
Gly
CCC
[ENA]
¢þ
>WENV180810523
ODJL01000003
[ODJL] human metagenome; G_DNA_Posterior fornix
19717
19802
+
Leu
CAG
[ENA]
¢þ
>WENV180810538
ODJL01000012
[ODJL] human metagenome; G_DNA_Posterior fornix
28331
28418
+
Leu
AAG
[ENA]
¢þ
>WENV180810541
ODJL01000013
[ODJL] human metagenome; G_DNA_Posterior fornix
35556
35481
-
Arg
CCT
[ENA]
¢þ
>WENV180810524
ODJL01000005
[ODJL] human metagenome; G_DNA_Posterior fornix
52156
52227
+
Gly
GCC
[ENA]
¢þ
>WENV180810525
ODJL01000005
[ODJL] human metagenome; G_DNA_Posterior fornix
52407
52481
+
Gly
GCC
[ENA]
¢þ
>WENV180810534
ODJL01000011
[ODJL] human metagenome; G_DNA_Posterior fornix
58241
58156
-
Leu
CAA
[ENA]
¢þ
>WENV180810533
ODJL01000011
[ODJL] human metagenome; G_DNA_Posterior fornix
58338
58268
-
Cys
GCA
[ENA]
¢þ
>WENV180810532
ODJL01000011
[ODJL] human metagenome; G_DNA_Posterior fornix
58463
58390
-
His
GTG
[ENA]
¢þ
>WENV180810531
ODJL01000011
[ODJL] human metagenome; G_DNA_Posterior fornix
58548
58476
-
Trp
CCA
[ENA]
¢þ
>WENV180810529
ODJL01000010
[ODJL] human metagenome; G_DNA_Posterior fornix
58877
58950
+
Lys
CTT
[ENA]
¢þ
>WENV180810530
ODJL01000010
[ODJL] human metagenome; G_DNA_Posterior fornix
63050
63123
+
Lys
CTT
[ENA]
¢þ
>WENV180810526
ODJL01000009
[ODJL] human metagenome; G_DNA_Posterior fornix
63633
63541
-
Ser
GGA
[ENA]
¢þ
>WENV180810522
ODJL01000002
[ODJL] human metagenome; G_DNA_Posterior fornix
101152
101226
+
Thr
AGT
[ENA]
¢þ
>WENV180810520
ODJL01000001
[ODJL] human metagenome; G_DNA_Posterior fornix
148961
149047
+
Ser
CGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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