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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[ODJU] human metagenome; G_DNA_Posterior fornix
HIT:
56 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180822709
ODJU01004902
[ODJU] human metagenome; G_DNA_Posterior fornix
31
105
+
Glu
CTC
[ENA]
¢þ
>WENV180822681
ODJU01000027
[ODJU] human metagenome; G_DNA_Posterior fornix
58
133
+
Val
TAC
[ENA]
¢þ
>WENV180822710
ODJU01005064
[ODJU] human metagenome; G_DNA_Posterior fornix
62
135
+
Asn
GTT
[ENA]
¢þ
>WENV180822707
ODJU01004230
[ODJU] human metagenome; G_DNA_Posterior fornix
93
20
-
Arg
ACG
[ENA]
¢þ
>WENV180822701
ODJU01001093
[ODJU] human metagenome; G_DNA_Posterior fornix
96
21
-
Glu
CTC
[ENA]
¢þ
>WENV180822702
ODJU01001332
[ODJU] human metagenome; G_DNA_Posterior fornix
97
171
+
Lys
TTT
[ENA]
¢þ
>WENV180822706
ODJU01003798
[ODJU] human metagenome; G_DNA_Posterior fornix
98
173
+
His
GTG
[ENA]
¢þ
>WENV180822708
ODJU01004893
[ODJU] human metagenome; G_DNA_Posterior fornix
106
32
-
Lys
CTT
[ENA]
¢þ
>WENV180822705
ODJU01002887
[ODJU] human metagenome; G_DNA_Posterior fornix
109
184
+
Asn
GTT
[ENA]
¢þ
>WENV180822661
ODJU01000004
[ODJU] human metagenome; G_DNA_Posterior fornix
120
211
+
Ser
GGA
[ENA]
¢þ
>WENV180822704
ODJU01001795
[ODJU] human metagenome; G_DNA_Posterior fornix
129
54
-
Asp
GTC
[ENA]
¢þ
>WENV180822682
ODJU01000027
[ODJU] human metagenome; G_DNA_Posterior fornix
134
206
+
Lys
TTT
[ENA]
¢þ
>WENV180822697
ODJU01000692
[ODJU] human metagenome; G_DNA_Posterior fornix
139
64
-
Thr
TGT
[ENA]
¢þ
>WENV180822699
ODJU01001042
[ODJU] human metagenome; G_DNA_Posterior fornix
146
72
-
Ala
TGC
[ENA]
¢þ
>WENV180822703
ODJU01001795
[ODJU] human metagenome; G_DNA_Posterior fornix
206
131
-
fMet
CAT
[ENA]
¢þ
>WENV180822683
ODJU01000027
[ODJU] human metagenome; G_DNA_Posterior fornix
221
304
+
Leu
TAG
[ENA]
¢þ
>WENV180822698
ODJU01001042
[ODJU] human metagenome; G_DNA_Posterior fornix
247
174
-
Ile
GAT
[ENA]
¢þ
>WENV180822696
ODJU01000332
[ODJU] human metagenome; G_DNA_Posterior fornix
304
221
-
Leu
TAG
[ENA]
¢þ
>WENV180822700
ODJU01001093
[ODJU] human metagenome; G_DNA_Posterior fornix
304
232
-
Gln
CTG
[ENA]
¢þ
>WENV180822662
ODJU01000004
[ODJU] human metagenome; G_DNA_Posterior fornix
309
382
+
Glu
TTC
[ENA]
¢þ
>WENV180822684
ODJU01000027
[ODJU] human metagenome; G_DNA_Posterior fornix
336
409
+
Thr
TGT
[ENA]
¢þ
>WENV180822663
ODJU01000004
[ODJU] human metagenome; G_DNA_Posterior fornix
385
459
+
Val
TAC
[ENA]
¢þ
>WENV180822685
ODJU01000027
[ODJU] human metagenome; G_DNA_Posterior fornix
414
485
+
Gly
GCC
[ENA]
¢þ
>WENV180822686
ODJU01000027
[ODJU] human metagenome; G_DNA_Posterior fornix
497
584
+
Leu
TAA
[ENA]
¢þ
>WENV180822687
ODJU01000027
[ODJU] human metagenome; G_DNA_Posterior fornix
593
669
+
Arg
ACG
[ENA]
¢þ
>WENV180822688
ODJU01000027
[ODJU] human metagenome; G_DNA_Posterior fornix
673
746
+
Pro
TGG
[ENA]
¢þ
>WENV180822695
ODJU01000048
[ODJU] human metagenome; G_DNA_Posterior fornix
687
758
+
Glu
TTC
[ENA]
¢þ
>WENV180822689
ODJU01000027
[ODJU] human metagenome; G_DNA_Posterior fornix
773
848
+
Met
CAT
[ENA]
¢þ
>WENV180822690
ODJU01000027
[ODJU] human metagenome; G_DNA_Posterior fornix
860
935
+
Ile2
CAT
[ENA]
¢þ
>WENV180822670
ODJU01000011
[ODJU] human metagenome; G_DNA_Posterior fornix
909
983
+
Thr
CGT
[ENA]
¢þ
>WENV180822691
ODJU01000027
[ODJU] human metagenome; G_DNA_Posterior fornix
969
1044
+
fMet
CAT
[ENA]
¢þ
>WENV180822692
ODJU01000027
[ODJU] human metagenome; G_DNA_Posterior fornix
1124
1198
+
Phe
GAA
[ENA]
¢þ
>WENV180822693
ODJU01000027
[ODJU] human metagenome; G_DNA_Posterior fornix
1287
1362
+
Ile
GAT
[ENA]
¢þ
>WENV180822694
ODJU01000027
[ODJU] human metagenome; G_DNA_Posterior fornix
1363
1454
+
Ser
GCT
[ENA]
¢þ
>WENV180822657
ODJU01000001
[ODJU] human metagenome; G_DNA_Posterior fornix
4857
4785
-
Arg
CCT
[ENA]
¢þ
>WENV180822680
ODJU01000015
[ODJU] human metagenome; G_DNA_Posterior fornix
5759
5674
-
Leu
CAA
[ENA]
¢þ
>WENV180822679
ODJU01000015
[ODJU] human metagenome; G_DNA_Posterior fornix
5862
5792
-
Cys
GCA
[ENA]
¢þ
>WENV180822678
ODJU01000015
[ODJU] human metagenome; G_DNA_Posterior fornix
5958
5885
-
Gln
TTG
[ENA]
¢þ
>WENV180822677
ODJU01000015
[ODJU] human metagenome; G_DNA_Posterior fornix
6037
5964
-
His
GTG
[ENA]
¢þ
>WENV180822676
ODJU01000015
[ODJU] human metagenome; G_DNA_Posterior fornix
6123
6051
-
Trp
CCA
[ENA]
¢þ
>WENV180822675
ODJU01000015
[ODJU] human metagenome; G_DNA_Posterior fornix
6208
6127
-
Tyr
GTA
[ENA]
¢þ
>WENV180822673
ODJU01000014
[ODJU] human metagenome; G_DNA_Posterior fornix
6500
6573
+
Gln
TTG
[ENA]
¢þ
>WENV180822674
ODJU01000014
[ODJU] human metagenome; G_DNA_Posterior fornix
7705
7788
+
Tyr
GTA
[ENA]
¢þ
>WENV180822668
ODJU01000008
[ODJU] human metagenome; G_DNA_Posterior fornix
16294
16379
+
Leu
AAG
[ENA]
¢þ
>WENV180822672
ODJU01000011
[ODJU] human metagenome; G_DNA_Posterior fornix
16823
16751
-
Gln
CTG
[ENA]
¢þ
>WENV180822671
ODJU01000011
[ODJU] human metagenome; G_DNA_Posterior fornix
16900
16827
-
Glu
CTC
[ENA]
¢þ
>WENV180822664
ODJU01000004
[ODJU] human metagenome; G_DNA_Posterior fornix
17921
17838
-
Leu
CAG
[ENA]
¢þ
>WENV180822666
ODJU01000005
[ODJU] human metagenome; G_DNA_Posterior fornix
36416
36344
-
Thr
AGT
[ENA]
¢þ
>WENV180822667
ODJU01000006
[ODJU] human metagenome; G_DNA_Posterior fornix
42879
42951
+
Thr
GGT
[ENA]
¢þ
>WENV180822669
ODJU01000009
[ODJU] human metagenome; G_DNA_Posterior fornix
48550
48479
-
Arg
CCG
[ENA]
¢þ
>WENV180822660
ODJU01000002
[ODJU] human metagenome; G_DNA_Posterior fornix
57126
57054
-
Gly
CCC
[ENA]
¢þ
>WENV180822655
ODJU01000001
[ODJU] human metagenome; G_DNA_Posterior fornix
64147
64220
+
Arg
TCT
[ENA]
¢þ
>WENV180822656
ODJU01000001
[ODJU] human metagenome; G_DNA_Posterior fornix
77425
77511
+
Ser
CGA
[ENA]
¢þ
>WENV180822665
ODJU01000005
[ODJU] human metagenome; G_DNA_Posterior fornix
98797
98723
-
Lys
CTT
[ENA]
¢þ
>WENV180822658
ODJU01000002
[ODJU] human metagenome; G_DNA_Posterior fornix
153751
153822
+
Gly
GCC
[ENA]
¢þ
>WENV180822659
ODJU01000002
[ODJU] human metagenome; G_DNA_Posterior fornix
153861
153936
+
Pro
CGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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