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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[ODNB] human metagenome; G_DNA_Supragingival plaque
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180895541
ODNB01006125
[ODNB] human metagenome; G_DNA_Supragingival plaque
31
104
+
Val
CAC
[ENA]
¢þ
>WENV180895551
ODNB01009834
[ODNB] human metagenome; G_DNA_Supragingival plaque
33
106
+
Gln
TTG
[ENA]
¢þ
>WENV180895533
ODNB01002415
[ODNB] human metagenome; G_DNA_Supragingival plaque
36
108
+
Val
GAC
[ENA]
¢þ
>WENV180895543
ODNB01006723
[ODNB] human metagenome; G_DNA_Supragingival plaque
43
117
+
Glu
TTC
[ENA]
¢þ
>WENV180895518
ODNB01001199
[ODNB] human metagenome; G_DNA_Supragingival plaque
75
157
+
Tyr
GTA
[ENA]
¢þ
>WENV180895528
ODNB01001582
[ODNB] human metagenome; G_DNA_Supragingival plaque
81
7
-
Val
TAC
[ENA]
¢þ
>WENV180895548
ODNB01008646
[ODNB] human metagenome; G_DNA_Supragingival plaque
92
167
+
Thr
CGT
[ENA]
¢þ
>WENV180895550
ODNB01009597
[ODNB] human metagenome; G_DNA_Supragingival plaque
101
25
-
fMet
CAT
[ENA]
¢þ
>WENV180895536
ODNB01002634
[ODNB] human metagenome; G_DNA_Supragingival plaque
101
28
-
Arg
ACG
[ENA]
¢þ
>WENV180895547
ODNB01008183
[ODNB] human metagenome; G_DNA_Supragingival plaque
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180895552
ODNB01009834
[ODNB] human metagenome; G_DNA_Supragingival plaque
118
190
+
Cys
GCA
[ENA]
¢þ
>WENV180895514
ODNB01000726
[ODNB] human metagenome; G_DNA_Supragingival plaque
120
45
-
Glu
TTC
[ENA]
¢þ
>WENV180895544
ODNB01006723
[ODNB] human metagenome; G_DNA_Supragingival plaque
122
197
+
Val
TAC
[ENA]
¢þ
>WENV180895523
ODNB01001346
[ODNB] human metagenome; G_DNA_Supragingival plaque
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180895491
ODNB01000023
[ODNB] human metagenome; G_DNA_Supragingival plaque
135
207
+
Asn
GTT
[ENA]
¢þ
>WENV180895545
ODNB01007775
[ODNB] human metagenome; G_DNA_Supragingival plaque
138
64
-
Pro
GGG
[ENA]
¢þ
>WENV180895549
ODNB01008728
[ODNB] human metagenome; G_DNA_Supragingival plaque
146
73
-
Gly
TCC
[ENA]
¢þ
>WENV180895530
ODNB01001721
[ODNB] human metagenome; G_DNA_Supragingival plaque
173
247
+
Ala
TGC
[ENA]
¢þ
>WENV180895535
ODNB01002602
[ODNB] human metagenome; G_DNA_Supragingival plaque
178
253
+
Thr
TGT
[ENA]
¢þ
>WENV180895542
ODNB01006503
[ODNB] human metagenome; G_DNA_Supragingival plaque
180
88
-
Ser
TGA
[ENA]
¢þ
>WENV180895506
ODNB01000429
[ODNB] human metagenome; G_DNA_Supragingival plaque
196
122
-
Ala
TGC
[ENA]
¢þ
>WENV180895546
ODNB01008183
[ODNB] human metagenome; G_DNA_Supragingival plaque
211
123
-
Leu
TAA
[ENA]
¢þ
>WENV180895516
ODNB01001032
[ODNB] human metagenome; G_DNA_Supragingival plaque
217
290
+
Trp
CCA
[ENA]
¢þ
>WENV180895540
ODNB01003947
[ODNB] human metagenome; G_DNA_Supragingival plaque
226
142
-
Leu
TAG
[ENA]
¢þ
>WENV180895522
ODNB01001346
[ODNB] human metagenome; G_DNA_Supragingival plaque
230
157
-
Gly
GCC
[ENA]
¢þ
>WENV180895538
ODNB01003389
[ODNB] human metagenome; G_DNA_Supragingival plaque
231
303
+
Thr
GGT
[ENA]
¢þ
>WENV180895539
ODNB01003907
[ODNB] human metagenome; G_DNA_Supragingival plaque
234
310
+
Ile2
CAT
[ENA]
¢þ
>WENV180895525
ODNB01001403
[ODNB] human metagenome; G_DNA_Supragingival plaque
244
169
-
Glu
CTC
[ENA]
¢þ
>WENV180895526
ODNB01001408
[ODNB] human metagenome; G_DNA_Supragingival plaque
263
346
+
Leu
CAG
[ENA]
¢þ
>WENV180895513
ODNB01000726
[ODNB] human metagenome; G_DNA_Supragingival plaque
274
199
-
Ala
GGC
[ENA]
¢þ
>WENV180895534
ODNB01002487
[ODNB] human metagenome; G_DNA_Supragingival plaque
279
364
+
Ser
TGA
[ENA]
¢þ
>WENV180895537
ODNB01002917
[ODNB] human metagenome; G_DNA_Supragingival plaque
296
370
+
Lys
CTT
[ENA]
¢þ
>WENV180895512
ODNB01000693
[ODNB] human metagenome; G_DNA_Supragingival plaque
315
239
-
Pro
CGG
[ENA]
¢þ
>WENV180895532
ODNB01001853
[ODNB] human metagenome; G_DNA_Supragingival plaque
334
249
-
Ser
TGA
[ENA]
¢þ
>WENV180895519
ODNB01001199
[ODNB] human metagenome; G_DNA_Supragingival plaque
358
431
+
Thr
GGT
[ENA]
¢þ
>WENV180895521
ODNB01001268
[ODNB] human metagenome; G_DNA_Supragingival plaque
366
441
+
Trp
CCA
[ENA]
¢þ
>WENV180895496
ODNB01000061
[ODNB] human metagenome; G_DNA_Supragingival plaque
381
311
-
Met
CAT
[ENA]
¢þ
>WENV180895501
ODNB01000316
[ODNB] human metagenome; G_DNA_Supragingival plaque
384
458
+
Asp
GTC
[ENA]
¢þ
>WENV180895531
ODNB01001853
[ODNB] human metagenome; G_DNA_Supragingival plaque
440
358
-
Tyr
GTA
[ENA]
¢þ
>WENV180895524
ODNB01001403
[ODNB] human metagenome; G_DNA_Supragingival plaque
452
380
-
Gln
CTG
[ENA]
¢þ
>WENV180895515
ODNB01001011
[ODNB] human metagenome; G_DNA_Supragingival plaque
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180895517
ODNB01001097
[ODNB] human metagenome; G_DNA_Supragingival plaque
484
557
+
Asn
GTT
[ENA]
¢þ
>WENV180895529
ODNB01001663
[ODNB] human metagenome; G_DNA_Supragingival plaque
492
407
-
Ser
GGA
[ENA]
¢þ
>WENV180895520
ODNB01001199
[ODNB] human metagenome; G_DNA_Supragingival plaque
496
570
+
Met
CAT
[ENA]
¢þ
>WENV180895502
ODNB01000316
[ODNB] human metagenome; G_DNA_Supragingival plaque
519
594
+
Phe
GAA
[ENA]
¢þ
>WENV180895504
ODNB01000353
[ODNB] human metagenome; G_DNA_Supragingival plaque
529
604
+
Lys
TTT
[ENA]
¢þ
>WENV180895527
ODNB01001520
[ODNB] human metagenome; G_DNA_Supragingival plaque
545
470
-
Asn
GTT
[ENA]
¢þ
>WENV180895494
ODNB01000059
[ODNB] human metagenome; G_DNA_Supragingival plaque
548
618
+
Val
TAC
[ENA]
¢þ
>WENV180895511
ODNB01000587
[ODNB] human metagenome; G_DNA_Supragingival plaque
555
481
-
Lys
TTT
[ENA]
¢þ
>WENV180895509
ODNB01000538
[ODNB] human metagenome; G_DNA_Supragingival plaque
632
715
+
Leu
TAG
[ENA]
¢þ
>WENV180895508
ODNB01000494
[ODNB] human metagenome; G_DNA_Supragingival plaque
709
782
+
Ala
GGC
[ENA]
¢þ
>WENV180895510
ODNB01000553
[ODNB] human metagenome; G_DNA_Supragingival plaque
815
890
+
His
GTG
[ENA]
¢þ
>WENV180895499
ODNB01000151
[ODNB] human metagenome; G_DNA_Supragingival plaque
941
1016
+
Arg
TCT
[ENA]
¢þ
>WENV180895507
ODNB01000482
[ODNB] human metagenome; G_DNA_Supragingival plaque
1069
996
-
Arg
CCT
[ENA]
¢þ
>WENV180895505
ODNB01000353
[ODNB] human metagenome; G_DNA_Supragingival plaque
1209
1136
-
Thr
TGT
[ENA]
¢þ
>WENV180895503
ODNB01000318
[ODNB] human metagenome; G_DNA_Supragingival plaque
1263
1188
-
Ala
TGC
[ENA]
¢þ
>WENV180895500
ODNB01000219
[ODNB] human metagenome; G_DNA_Supragingival plaque
1359
1284
-
Thr
CGT
[ENA]
¢þ
>WENV180895495
ODNB01000061
[ODNB] human metagenome; G_DNA_Supragingival plaque
1607
1680
+
His
GTG
[ENA]
¢þ
>WENV180895492
ODNB01000038
[ODNB] human metagenome; G_DNA_Supragingival plaque
1632
1716
+
Leu
TAG
[ENA]
¢þ
>WENV180895498
ODNB01000143
[ODNB] human metagenome; G_DNA_Supragingival plaque
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180895497
ODNB01000063
[ODNB] human metagenome; G_DNA_Supragingival plaque
1966
2053
+
Ser
CGA
[ENA]
¢þ
>WENV180895493
ODNB01000038
[ODNB] human metagenome; G_DNA_Supragingival plaque
2093
2168
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK