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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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|
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HOW TO USE
tRNA gene List
[ODNP] human metagenome; G_DNA_Stool
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180898425
ODNP01006125
[ODNP] human metagenome; G_DNA_Stool
31
104
+
Val
CAC
[ENA]
¢þ
>WENV180898435
ODNP01009834
[ODNP] human metagenome; G_DNA_Stool
33
106
+
Gln
TTG
[ENA]
¢þ
>WENV180898417
ODNP01002415
[ODNP] human metagenome; G_DNA_Stool
36
108
+
Val
GAC
[ENA]
¢þ
>WENV180898427
ODNP01006723
[ODNP] human metagenome; G_DNA_Stool
43
117
+
Glu
TTC
[ENA]
¢þ
>WENV180898402
ODNP01001199
[ODNP] human metagenome; G_DNA_Stool
75
157
+
Tyr
GTA
[ENA]
¢þ
>WENV180898412
ODNP01001582
[ODNP] human metagenome; G_DNA_Stool
81
7
-
Val
TAC
[ENA]
¢þ
>WENV180898432
ODNP01008646
[ODNP] human metagenome; G_DNA_Stool
92
167
+
Thr
CGT
[ENA]
¢þ
>WENV180898434
ODNP01009597
[ODNP] human metagenome; G_DNA_Stool
101
25
-
fMet
CAT
[ENA]
¢þ
>WENV180898420
ODNP01002634
[ODNP] human metagenome; G_DNA_Stool
101
28
-
Arg
ACG
[ENA]
¢þ
>WENV180898431
ODNP01008183
[ODNP] human metagenome; G_DNA_Stool
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180898436
ODNP01009834
[ODNP] human metagenome; G_DNA_Stool
118
190
+
Cys
GCA
[ENA]
¢þ
>WENV180898398
ODNP01000726
[ODNP] human metagenome; G_DNA_Stool
120
45
-
Glu
TTC
[ENA]
¢þ
>WENV180898428
ODNP01006723
[ODNP] human metagenome; G_DNA_Stool
122
197
+
Val
TAC
[ENA]
¢þ
>WENV180898407
ODNP01001346
[ODNP] human metagenome; G_DNA_Stool
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180898375
ODNP01000023
[ODNP] human metagenome; G_DNA_Stool
135
207
+
Asn
GTT
[ENA]
¢þ
>WENV180898429
ODNP01007775
[ODNP] human metagenome; G_DNA_Stool
138
64
-
Pro
GGG
[ENA]
¢þ
>WENV180898433
ODNP01008728
[ODNP] human metagenome; G_DNA_Stool
146
73
-
Gly
TCC
[ENA]
¢þ
>WENV180898414
ODNP01001721
[ODNP] human metagenome; G_DNA_Stool
173
247
+
Ala
TGC
[ENA]
¢þ
>WENV180898419
ODNP01002602
[ODNP] human metagenome; G_DNA_Stool
178
253
+
Thr
TGT
[ENA]
¢þ
>WENV180898426
ODNP01006503
[ODNP] human metagenome; G_DNA_Stool
180
88
-
Ser
TGA
[ENA]
¢þ
>WENV180898390
ODNP01000429
[ODNP] human metagenome; G_DNA_Stool
196
122
-
Ala
TGC
[ENA]
¢þ
>WENV180898430
ODNP01008183
[ODNP] human metagenome; G_DNA_Stool
211
123
-
Leu
TAA
[ENA]
¢þ
>WENV180898400
ODNP01001032
[ODNP] human metagenome; G_DNA_Stool
217
290
+
Trp
CCA
[ENA]
¢þ
>WENV180898424
ODNP01003947
[ODNP] human metagenome; G_DNA_Stool
226
142
-
Leu
TAG
[ENA]
¢þ
>WENV180898406
ODNP01001346
[ODNP] human metagenome; G_DNA_Stool
230
157
-
Gly
GCC
[ENA]
¢þ
>WENV180898422
ODNP01003389
[ODNP] human metagenome; G_DNA_Stool
231
303
+
Thr
GGT
[ENA]
¢þ
>WENV180898423
ODNP01003907
[ODNP] human metagenome; G_DNA_Stool
234
310
+
Ile2
CAT
[ENA]
¢þ
>WENV180898409
ODNP01001403
[ODNP] human metagenome; G_DNA_Stool
244
169
-
Glu
CTC
[ENA]
¢þ
>WENV180898410
ODNP01001408
[ODNP] human metagenome; G_DNA_Stool
263
346
+
Leu
CAG
[ENA]
¢þ
>WENV180898397
ODNP01000726
[ODNP] human metagenome; G_DNA_Stool
274
199
-
Ala
GGC
[ENA]
¢þ
>WENV180898418
ODNP01002487
[ODNP] human metagenome; G_DNA_Stool
279
364
+
Ser
TGA
[ENA]
¢þ
>WENV180898421
ODNP01002917
[ODNP] human metagenome; G_DNA_Stool
296
370
+
Lys
CTT
[ENA]
¢þ
>WENV180898396
ODNP01000693
[ODNP] human metagenome; G_DNA_Stool
315
239
-
Pro
CGG
[ENA]
¢þ
>WENV180898416
ODNP01001853
[ODNP] human metagenome; G_DNA_Stool
334
249
-
Ser
TGA
[ENA]
¢þ
>WENV180898403
ODNP01001199
[ODNP] human metagenome; G_DNA_Stool
358
431
+
Thr
GGT
[ENA]
¢þ
>WENV180898405
ODNP01001268
[ODNP] human metagenome; G_DNA_Stool
366
441
+
Trp
CCA
[ENA]
¢þ
>WENV180898380
ODNP01000061
[ODNP] human metagenome; G_DNA_Stool
381
311
-
Met
CAT
[ENA]
¢þ
>WENV180898385
ODNP01000316
[ODNP] human metagenome; G_DNA_Stool
384
458
+
Asp
GTC
[ENA]
¢þ
>WENV180898415
ODNP01001853
[ODNP] human metagenome; G_DNA_Stool
440
358
-
Tyr
GTA
[ENA]
¢þ
>WENV180898408
ODNP01001403
[ODNP] human metagenome; G_DNA_Stool
452
380
-
Gln
CTG
[ENA]
¢þ
>WENV180898399
ODNP01001011
[ODNP] human metagenome; G_DNA_Stool
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180898401
ODNP01001097
[ODNP] human metagenome; G_DNA_Stool
484
557
+
Asn
GTT
[ENA]
¢þ
>WENV180898413
ODNP01001663
[ODNP] human metagenome; G_DNA_Stool
492
407
-
Ser
GGA
[ENA]
¢þ
>WENV180898404
ODNP01001199
[ODNP] human metagenome; G_DNA_Stool
496
570
+
Met
CAT
[ENA]
¢þ
>WENV180898386
ODNP01000316
[ODNP] human metagenome; G_DNA_Stool
519
594
+
Phe
GAA
[ENA]
¢þ
>WENV180898388
ODNP01000353
[ODNP] human metagenome; G_DNA_Stool
529
604
+
Lys
TTT
[ENA]
¢þ
>WENV180898411
ODNP01001520
[ODNP] human metagenome; G_DNA_Stool
545
470
-
Asn
GTT
[ENA]
¢þ
>WENV180898378
ODNP01000059
[ODNP] human metagenome; G_DNA_Stool
548
618
+
Val
TAC
[ENA]
¢þ
>WENV180898395
ODNP01000587
[ODNP] human metagenome; G_DNA_Stool
555
481
-
Lys
TTT
[ENA]
¢þ
>WENV180898393
ODNP01000538
[ODNP] human metagenome; G_DNA_Stool
632
715
+
Leu
TAG
[ENA]
¢þ
>WENV180898392
ODNP01000494
[ODNP] human metagenome; G_DNA_Stool
709
782
+
Ala
GGC
[ENA]
¢þ
>WENV180898394
ODNP01000553
[ODNP] human metagenome; G_DNA_Stool
815
890
+
His
GTG
[ENA]
¢þ
>WENV180898383
ODNP01000151
[ODNP] human metagenome; G_DNA_Stool
941
1016
+
Arg
TCT
[ENA]
¢þ
>WENV180898391
ODNP01000482
[ODNP] human metagenome; G_DNA_Stool
1069
996
-
Arg
CCT
[ENA]
¢þ
>WENV180898389
ODNP01000353
[ODNP] human metagenome; G_DNA_Stool
1209
1136
-
Thr
TGT
[ENA]
¢þ
>WENV180898387
ODNP01000318
[ODNP] human metagenome; G_DNA_Stool
1263
1188
-
Ala
TGC
[ENA]
¢þ
>WENV180898384
ODNP01000219
[ODNP] human metagenome; G_DNA_Stool
1359
1284
-
Thr
CGT
[ENA]
¢þ
>WENV180898379
ODNP01000061
[ODNP] human metagenome; G_DNA_Stool
1607
1680
+
His
GTG
[ENA]
¢þ
>WENV180898376
ODNP01000038
[ODNP] human metagenome; G_DNA_Stool
1632
1716
+
Leu
TAG
[ENA]
¢þ
>WENV180898382
ODNP01000143
[ODNP] human metagenome; G_DNA_Stool
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180898381
ODNP01000063
[ODNP] human metagenome; G_DNA_Stool
1966
2053
+
Ser
CGA
[ENA]
¢þ
>WENV180898377
ODNP01000038
[ODNP] human metagenome; G_DNA_Stool
2093
2168
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK