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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[ODPL] human metagenome; G_DNA_Palatine Tonsils
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180906364
ODPL01006125
[ODPL] human metagenome; G_DNA_Palatine Tonsils
31
104
+
Val
CAC
[ENA]
¢þ
>WENV180906374
ODPL01009834
[ODPL] human metagenome; G_DNA_Palatine Tonsils
33
106
+
Gln
TTG
[ENA]
¢þ
>WENV180906356
ODPL01002415
[ODPL] human metagenome; G_DNA_Palatine Tonsils
36
108
+
Val
GAC
[ENA]
¢þ
>WENV180906366
ODPL01006723
[ODPL] human metagenome; G_DNA_Palatine Tonsils
43
117
+
Glu
TTC
[ENA]
¢þ
>WENV180906341
ODPL01001199
[ODPL] human metagenome; G_DNA_Palatine Tonsils
75
157
+
Tyr
GTA
[ENA]
¢þ
>WENV180906351
ODPL01001582
[ODPL] human metagenome; G_DNA_Palatine Tonsils
81
7
-
Val
TAC
[ENA]
¢þ
>WENV180906371
ODPL01008646
[ODPL] human metagenome; G_DNA_Palatine Tonsils
92
167
+
Thr
CGT
[ENA]
¢þ
>WENV180906373
ODPL01009597
[ODPL] human metagenome; G_DNA_Palatine Tonsils
101
25
-
fMet
CAT
[ENA]
¢þ
>WENV180906359
ODPL01002634
[ODPL] human metagenome; G_DNA_Palatine Tonsils
101
28
-
Arg
ACG
[ENA]
¢þ
>WENV180906370
ODPL01008183
[ODPL] human metagenome; G_DNA_Palatine Tonsils
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180906375
ODPL01009834
[ODPL] human metagenome; G_DNA_Palatine Tonsils
118
190
+
Cys
GCA
[ENA]
¢þ
>WENV180906337
ODPL01000726
[ODPL] human metagenome; G_DNA_Palatine Tonsils
120
45
-
Glu
TTC
[ENA]
¢þ
>WENV180906367
ODPL01006723
[ODPL] human metagenome; G_DNA_Palatine Tonsils
122
197
+
Val
TAC
[ENA]
¢þ
>WENV180906346
ODPL01001346
[ODPL] human metagenome; G_DNA_Palatine Tonsils
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180906314
ODPL01000023
[ODPL] human metagenome; G_DNA_Palatine Tonsils
135
207
+
Asn
GTT
[ENA]
¢þ
>WENV180906368
ODPL01007775
[ODPL] human metagenome; G_DNA_Palatine Tonsils
138
64
-
Pro
GGG
[ENA]
¢þ
>WENV180906372
ODPL01008728
[ODPL] human metagenome; G_DNA_Palatine Tonsils
146
73
-
Gly
TCC
[ENA]
¢þ
>WENV180906353
ODPL01001721
[ODPL] human metagenome; G_DNA_Palatine Tonsils
173
247
+
Ala
TGC
[ENA]
¢þ
>WENV180906358
ODPL01002602
[ODPL] human metagenome; G_DNA_Palatine Tonsils
178
253
+
Thr
TGT
[ENA]
¢þ
>WENV180906365
ODPL01006503
[ODPL] human metagenome; G_DNA_Palatine Tonsils
180
88
-
Ser
TGA
[ENA]
¢þ
>WENV180906329
ODPL01000429
[ODPL] human metagenome; G_DNA_Palatine Tonsils
196
122
-
Ala
TGC
[ENA]
¢þ
>WENV180906369
ODPL01008183
[ODPL] human metagenome; G_DNA_Palatine Tonsils
211
123
-
Leu
TAA
[ENA]
¢þ
>WENV180906339
ODPL01001032
[ODPL] human metagenome; G_DNA_Palatine Tonsils
217
290
+
Trp
CCA
[ENA]
¢þ
>WENV180906363
ODPL01003947
[ODPL] human metagenome; G_DNA_Palatine Tonsils
226
142
-
Leu
TAG
[ENA]
¢þ
>WENV180906345
ODPL01001346
[ODPL] human metagenome; G_DNA_Palatine Tonsils
230
157
-
Gly
GCC
[ENA]
¢þ
>WENV180906361
ODPL01003389
[ODPL] human metagenome; G_DNA_Palatine Tonsils
231
303
+
Thr
GGT
[ENA]
¢þ
>WENV180906362
ODPL01003907
[ODPL] human metagenome; G_DNA_Palatine Tonsils
234
310
+
Ile2
CAT
[ENA]
¢þ
>WENV180906348
ODPL01001403
[ODPL] human metagenome; G_DNA_Palatine Tonsils
244
169
-
Glu
CTC
[ENA]
¢þ
>WENV180906349
ODPL01001408
[ODPL] human metagenome; G_DNA_Palatine Tonsils
263
346
+
Leu
CAG
[ENA]
¢þ
>WENV180906336
ODPL01000726
[ODPL] human metagenome; G_DNA_Palatine Tonsils
274
199
-
Ala
GGC
[ENA]
¢þ
>WENV180906357
ODPL01002487
[ODPL] human metagenome; G_DNA_Palatine Tonsils
279
364
+
Ser
TGA
[ENA]
¢þ
>WENV180906360
ODPL01002917
[ODPL] human metagenome; G_DNA_Palatine Tonsils
296
370
+
Lys
CTT
[ENA]
¢þ
>WENV180906335
ODPL01000693
[ODPL] human metagenome; G_DNA_Palatine Tonsils
315
239
-
Pro
CGG
[ENA]
¢þ
>WENV180906355
ODPL01001853
[ODPL] human metagenome; G_DNA_Palatine Tonsils
334
249
-
Ser
TGA
[ENA]
¢þ
>WENV180906342
ODPL01001199
[ODPL] human metagenome; G_DNA_Palatine Tonsils
358
431
+
Thr
GGT
[ENA]
¢þ
>WENV180906344
ODPL01001268
[ODPL] human metagenome; G_DNA_Palatine Tonsils
366
441
+
Trp
CCA
[ENA]
¢þ
>WENV180906319
ODPL01000061
[ODPL] human metagenome; G_DNA_Palatine Tonsils
381
311
-
Met
CAT
[ENA]
¢þ
>WENV180906324
ODPL01000316
[ODPL] human metagenome; G_DNA_Palatine Tonsils
384
458
+
Asp
GTC
[ENA]
¢þ
>WENV180906354
ODPL01001853
[ODPL] human metagenome; G_DNA_Palatine Tonsils
440
358
-
Tyr
GTA
[ENA]
¢þ
>WENV180906347
ODPL01001403
[ODPL] human metagenome; G_DNA_Palatine Tonsils
452
380
-
Gln
CTG
[ENA]
¢þ
>WENV180906338
ODPL01001011
[ODPL] human metagenome; G_DNA_Palatine Tonsils
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180906340
ODPL01001097
[ODPL] human metagenome; G_DNA_Palatine Tonsils
484
557
+
Asn
GTT
[ENA]
¢þ
>WENV180906352
ODPL01001663
[ODPL] human metagenome; G_DNA_Palatine Tonsils
492
407
-
Ser
GGA
[ENA]
¢þ
>WENV180906343
ODPL01001199
[ODPL] human metagenome; G_DNA_Palatine Tonsils
496
570
+
Met
CAT
[ENA]
¢þ
>WENV180906325
ODPL01000316
[ODPL] human metagenome; G_DNA_Palatine Tonsils
519
594
+
Phe
GAA
[ENA]
¢þ
>WENV180906327
ODPL01000353
[ODPL] human metagenome; G_DNA_Palatine Tonsils
529
604
+
Lys
TTT
[ENA]
¢þ
>WENV180906350
ODPL01001520
[ODPL] human metagenome; G_DNA_Palatine Tonsils
545
470
-
Asn
GTT
[ENA]
¢þ
>WENV180906317
ODPL01000059
[ODPL] human metagenome; G_DNA_Palatine Tonsils
548
618
+
Val
TAC
[ENA]
¢þ
>WENV180906334
ODPL01000587
[ODPL] human metagenome; G_DNA_Palatine Tonsils
555
481
-
Lys
TTT
[ENA]
¢þ
>WENV180906332
ODPL01000538
[ODPL] human metagenome; G_DNA_Palatine Tonsils
632
715
+
Leu
TAG
[ENA]
¢þ
>WENV180906331
ODPL01000494
[ODPL] human metagenome; G_DNA_Palatine Tonsils
709
782
+
Ala
GGC
[ENA]
¢þ
>WENV180906333
ODPL01000553
[ODPL] human metagenome; G_DNA_Palatine Tonsils
815
890
+
His
GTG
[ENA]
¢þ
>WENV180906322
ODPL01000151
[ODPL] human metagenome; G_DNA_Palatine Tonsils
941
1016
+
Arg
TCT
[ENA]
¢þ
>WENV180906330
ODPL01000482
[ODPL] human metagenome; G_DNA_Palatine Tonsils
1069
996
-
Arg
CCT
[ENA]
¢þ
>WENV180906328
ODPL01000353
[ODPL] human metagenome; G_DNA_Palatine Tonsils
1209
1136
-
Thr
TGT
[ENA]
¢þ
>WENV180906326
ODPL01000318
[ODPL] human metagenome; G_DNA_Palatine Tonsils
1263
1188
-
Ala
TGC
[ENA]
¢þ
>WENV180906323
ODPL01000219
[ODPL] human metagenome; G_DNA_Palatine Tonsils
1359
1284
-
Thr
CGT
[ENA]
¢þ
>WENV180906318
ODPL01000061
[ODPL] human metagenome; G_DNA_Palatine Tonsils
1607
1680
+
His
GTG
[ENA]
¢þ
>WENV180906315
ODPL01000038
[ODPL] human metagenome; G_DNA_Palatine Tonsils
1632
1716
+
Leu
TAG
[ENA]
¢þ
>WENV180906321
ODPL01000143
[ODPL] human metagenome; G_DNA_Palatine Tonsils
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180906320
ODPL01000063
[ODPL] human metagenome; G_DNA_Palatine Tonsils
1966
2053
+
Ser
CGA
[ENA]
¢þ
>WENV180906316
ODPL01000038
[ODPL] human metagenome; G_DNA_Palatine Tonsils
2093
2168
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK