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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[ODQC] human metagenome; G_DNA_Supragingival plaque
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180907418
ODQC01006125
[ODQC] human metagenome; G_DNA_Supragingival plaque
31
104
+
Val
CAC
[ENA]
¢þ
>WENV180907428
ODQC01009834
[ODQC] human metagenome; G_DNA_Supragingival plaque
33
106
+
Gln
TTG
[ENA]
¢þ
>WENV180907410
ODQC01002415
[ODQC] human metagenome; G_DNA_Supragingival plaque
36
108
+
Val
GAC
[ENA]
¢þ
>WENV180907420
ODQC01006723
[ODQC] human metagenome; G_DNA_Supragingival plaque
43
117
+
Glu
TTC
[ENA]
¢þ
>WENV180907395
ODQC01001199
[ODQC] human metagenome; G_DNA_Supragingival plaque
75
157
+
Tyr
GTA
[ENA]
¢þ
>WENV180907405
ODQC01001582
[ODQC] human metagenome; G_DNA_Supragingival plaque
81
7
-
Val
TAC
[ENA]
¢þ
>WENV180907425
ODQC01008646
[ODQC] human metagenome; G_DNA_Supragingival plaque
92
167
+
Thr
CGT
[ENA]
¢þ
>WENV180907427
ODQC01009597
[ODQC] human metagenome; G_DNA_Supragingival plaque
101
25
-
fMet
CAT
[ENA]
¢þ
>WENV180907413
ODQC01002634
[ODQC] human metagenome; G_DNA_Supragingival plaque
101
28
-
Arg
ACG
[ENA]
¢þ
>WENV180907424
ODQC01008183
[ODQC] human metagenome; G_DNA_Supragingival plaque
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180907429
ODQC01009834
[ODQC] human metagenome; G_DNA_Supragingival plaque
118
190
+
Cys
GCA
[ENA]
¢þ
>WENV180907391
ODQC01000726
[ODQC] human metagenome; G_DNA_Supragingival plaque
120
45
-
Glu
TTC
[ENA]
¢þ
>WENV180907421
ODQC01006723
[ODQC] human metagenome; G_DNA_Supragingival plaque
122
197
+
Val
TAC
[ENA]
¢þ
>WENV180907400
ODQC01001346
[ODQC] human metagenome; G_DNA_Supragingival plaque
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180907368
ODQC01000023
[ODQC] human metagenome; G_DNA_Supragingival plaque
135
207
+
Asn
GTT
[ENA]
¢þ
>WENV180907422
ODQC01007775
[ODQC] human metagenome; G_DNA_Supragingival plaque
138
64
-
Pro
GGG
[ENA]
¢þ
>WENV180907426
ODQC01008728
[ODQC] human metagenome; G_DNA_Supragingival plaque
146
73
-
Gly
TCC
[ENA]
¢þ
>WENV180907407
ODQC01001721
[ODQC] human metagenome; G_DNA_Supragingival plaque
173
247
+
Ala
TGC
[ENA]
¢þ
>WENV180907412
ODQC01002602
[ODQC] human metagenome; G_DNA_Supragingival plaque
178
253
+
Thr
TGT
[ENA]
¢þ
>WENV180907419
ODQC01006503
[ODQC] human metagenome; G_DNA_Supragingival plaque
180
88
-
Ser
TGA
[ENA]
¢þ
>WENV180907383
ODQC01000429
[ODQC] human metagenome; G_DNA_Supragingival plaque
196
122
-
Ala
TGC
[ENA]
¢þ
>WENV180907423
ODQC01008183
[ODQC] human metagenome; G_DNA_Supragingival plaque
211
123
-
Leu
TAA
[ENA]
¢þ
>WENV180907393
ODQC01001032
[ODQC] human metagenome; G_DNA_Supragingival plaque
217
290
+
Trp
CCA
[ENA]
¢þ
>WENV180907417
ODQC01003947
[ODQC] human metagenome; G_DNA_Supragingival plaque
226
142
-
Leu
TAG
[ENA]
¢þ
>WENV180907399
ODQC01001346
[ODQC] human metagenome; G_DNA_Supragingival plaque
230
157
-
Gly
GCC
[ENA]
¢þ
>WENV180907415
ODQC01003389
[ODQC] human metagenome; G_DNA_Supragingival plaque
231
303
+
Thr
GGT
[ENA]
¢þ
>WENV180907416
ODQC01003907
[ODQC] human metagenome; G_DNA_Supragingival plaque
234
310
+
Ile2
CAT
[ENA]
¢þ
>WENV180907402
ODQC01001403
[ODQC] human metagenome; G_DNA_Supragingival plaque
244
169
-
Glu
CTC
[ENA]
¢þ
>WENV180907403
ODQC01001408
[ODQC] human metagenome; G_DNA_Supragingival plaque
263
346
+
Leu
CAG
[ENA]
¢þ
>WENV180907390
ODQC01000726
[ODQC] human metagenome; G_DNA_Supragingival plaque
274
199
-
Ala
GGC
[ENA]
¢þ
>WENV180907411
ODQC01002487
[ODQC] human metagenome; G_DNA_Supragingival plaque
279
364
+
Ser
TGA
[ENA]
¢þ
>WENV180907414
ODQC01002917
[ODQC] human metagenome; G_DNA_Supragingival plaque
296
370
+
Lys
CTT
[ENA]
¢þ
>WENV180907389
ODQC01000693
[ODQC] human metagenome; G_DNA_Supragingival plaque
315
239
-
Pro
CGG
[ENA]
¢þ
>WENV180907409
ODQC01001853
[ODQC] human metagenome; G_DNA_Supragingival plaque
334
249
-
Ser
TGA
[ENA]
¢þ
>WENV180907396
ODQC01001199
[ODQC] human metagenome; G_DNA_Supragingival plaque
358
431
+
Thr
GGT
[ENA]
¢þ
>WENV180907398
ODQC01001268
[ODQC] human metagenome; G_DNA_Supragingival plaque
366
441
+
Trp
CCA
[ENA]
¢þ
>WENV180907373
ODQC01000061
[ODQC] human metagenome; G_DNA_Supragingival plaque
381
311
-
Met
CAT
[ENA]
¢þ
>WENV180907378
ODQC01000316
[ODQC] human metagenome; G_DNA_Supragingival plaque
384
458
+
Asp
GTC
[ENA]
¢þ
>WENV180907408
ODQC01001853
[ODQC] human metagenome; G_DNA_Supragingival plaque
440
358
-
Tyr
GTA
[ENA]
¢þ
>WENV180907401
ODQC01001403
[ODQC] human metagenome; G_DNA_Supragingival plaque
452
380
-
Gln
CTG
[ENA]
¢þ
>WENV180907392
ODQC01001011
[ODQC] human metagenome; G_DNA_Supragingival plaque
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180907394
ODQC01001097
[ODQC] human metagenome; G_DNA_Supragingival plaque
484
557
+
Asn
GTT
[ENA]
¢þ
>WENV180907406
ODQC01001663
[ODQC] human metagenome; G_DNA_Supragingival plaque
492
407
-
Ser
GGA
[ENA]
¢þ
>WENV180907397
ODQC01001199
[ODQC] human metagenome; G_DNA_Supragingival plaque
496
570
+
Met
CAT
[ENA]
¢þ
>WENV180907379
ODQC01000316
[ODQC] human metagenome; G_DNA_Supragingival plaque
519
594
+
Phe
GAA
[ENA]
¢þ
>WENV180907381
ODQC01000353
[ODQC] human metagenome; G_DNA_Supragingival plaque
529
604
+
Lys
TTT
[ENA]
¢þ
>WENV180907404
ODQC01001520
[ODQC] human metagenome; G_DNA_Supragingival plaque
545
470
-
Asn
GTT
[ENA]
¢þ
>WENV180907371
ODQC01000059
[ODQC] human metagenome; G_DNA_Supragingival plaque
548
618
+
Val
TAC
[ENA]
¢þ
>WENV180907388
ODQC01000587
[ODQC] human metagenome; G_DNA_Supragingival plaque
555
481
-
Lys
TTT
[ENA]
¢þ
>WENV180907386
ODQC01000538
[ODQC] human metagenome; G_DNA_Supragingival plaque
632
715
+
Leu
TAG
[ENA]
¢þ
>WENV180907385
ODQC01000494
[ODQC] human metagenome; G_DNA_Supragingival plaque
709
782
+
Ala
GGC
[ENA]
¢þ
>WENV180907387
ODQC01000553
[ODQC] human metagenome; G_DNA_Supragingival plaque
815
890
+
His
GTG
[ENA]
¢þ
>WENV180907376
ODQC01000151
[ODQC] human metagenome; G_DNA_Supragingival plaque
941
1016
+
Arg
TCT
[ENA]
¢þ
>WENV180907384
ODQC01000482
[ODQC] human metagenome; G_DNA_Supragingival plaque
1069
996
-
Arg
CCT
[ENA]
¢þ
>WENV180907382
ODQC01000353
[ODQC] human metagenome; G_DNA_Supragingival plaque
1209
1136
-
Thr
TGT
[ENA]
¢þ
>WENV180907380
ODQC01000318
[ODQC] human metagenome; G_DNA_Supragingival plaque
1263
1188
-
Ala
TGC
[ENA]
¢þ
>WENV180907377
ODQC01000219
[ODQC] human metagenome; G_DNA_Supragingival plaque
1359
1284
-
Thr
CGT
[ENA]
¢þ
>WENV180907372
ODQC01000061
[ODQC] human metagenome; G_DNA_Supragingival plaque
1607
1680
+
His
GTG
[ENA]
¢þ
>WENV180907369
ODQC01000038
[ODQC] human metagenome; G_DNA_Supragingival plaque
1632
1716
+
Leu
TAG
[ENA]
¢þ
>WENV180907375
ODQC01000143
[ODQC] human metagenome; G_DNA_Supragingival plaque
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180907374
ODQC01000063
[ODQC] human metagenome; G_DNA_Supragingival plaque
1966
2053
+
Ser
CGA
[ENA]
¢þ
>WENV180907370
ODQC01000038
[ODQC] human metagenome; G_DNA_Supragingival plaque
2093
2168
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK