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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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|
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HOW TO USE
tRNA gene List
[ODRZ] human metagenome; G_DNA_Stool
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180911983
ODRZ01006125
[ODRZ] human metagenome; G_DNA_Stool
31
104
+
Val
CAC
[ENA]
¢þ
>WENV180911993
ODRZ01009834
[ODRZ] human metagenome; G_DNA_Stool
33
106
+
Gln
TTG
[ENA]
¢þ
>WENV180911975
ODRZ01002415
[ODRZ] human metagenome; G_DNA_Stool
36
108
+
Val
GAC
[ENA]
¢þ
>WENV180911985
ODRZ01006723
[ODRZ] human metagenome; G_DNA_Stool
43
117
+
Glu
TTC
[ENA]
¢þ
>WENV180911960
ODRZ01001199
[ODRZ] human metagenome; G_DNA_Stool
75
157
+
Tyr
GTA
[ENA]
¢þ
>WENV180911970
ODRZ01001582
[ODRZ] human metagenome; G_DNA_Stool
81
7
-
Val
TAC
[ENA]
¢þ
>WENV180911990
ODRZ01008646
[ODRZ] human metagenome; G_DNA_Stool
92
167
+
Thr
CGT
[ENA]
¢þ
>WENV180911992
ODRZ01009597
[ODRZ] human metagenome; G_DNA_Stool
101
25
-
fMet
CAT
[ENA]
¢þ
>WENV180911978
ODRZ01002634
[ODRZ] human metagenome; G_DNA_Stool
101
28
-
Arg
ACG
[ENA]
¢þ
>WENV180911989
ODRZ01008183
[ODRZ] human metagenome; G_DNA_Stool
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180911994
ODRZ01009834
[ODRZ] human metagenome; G_DNA_Stool
118
190
+
Cys
GCA
[ENA]
¢þ
>WENV180911956
ODRZ01000726
[ODRZ] human metagenome; G_DNA_Stool
120
45
-
Glu
TTC
[ENA]
¢þ
>WENV180911986
ODRZ01006723
[ODRZ] human metagenome; G_DNA_Stool
122
197
+
Val
TAC
[ENA]
¢þ
>WENV180911965
ODRZ01001346
[ODRZ] human metagenome; G_DNA_Stool
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180911933
ODRZ01000023
[ODRZ] human metagenome; G_DNA_Stool
135
207
+
Asn
GTT
[ENA]
¢þ
>WENV180911987
ODRZ01007775
[ODRZ] human metagenome; G_DNA_Stool
138
64
-
Pro
GGG
[ENA]
¢þ
>WENV180911991
ODRZ01008728
[ODRZ] human metagenome; G_DNA_Stool
146
73
-
Gly
TCC
[ENA]
¢þ
>WENV180911972
ODRZ01001721
[ODRZ] human metagenome; G_DNA_Stool
173
247
+
Ala
TGC
[ENA]
¢þ
>WENV180911977
ODRZ01002602
[ODRZ] human metagenome; G_DNA_Stool
178
253
+
Thr
TGT
[ENA]
¢þ
>WENV180911984
ODRZ01006503
[ODRZ] human metagenome; G_DNA_Stool
180
88
-
Ser
TGA
[ENA]
¢þ
>WENV180911948
ODRZ01000429
[ODRZ] human metagenome; G_DNA_Stool
196
122
-
Ala
TGC
[ENA]
¢þ
>WENV180911988
ODRZ01008183
[ODRZ] human metagenome; G_DNA_Stool
211
123
-
Leu
TAA
[ENA]
¢þ
>WENV180911958
ODRZ01001032
[ODRZ] human metagenome; G_DNA_Stool
217
290
+
Trp
CCA
[ENA]
¢þ
>WENV180911982
ODRZ01003947
[ODRZ] human metagenome; G_DNA_Stool
226
142
-
Leu
TAG
[ENA]
¢þ
>WENV180911964
ODRZ01001346
[ODRZ] human metagenome; G_DNA_Stool
230
157
-
Gly
GCC
[ENA]
¢þ
>WENV180911980
ODRZ01003389
[ODRZ] human metagenome; G_DNA_Stool
231
303
+
Thr
GGT
[ENA]
¢þ
>WENV180911981
ODRZ01003907
[ODRZ] human metagenome; G_DNA_Stool
234
310
+
Ile2
CAT
[ENA]
¢þ
>WENV180911967
ODRZ01001403
[ODRZ] human metagenome; G_DNA_Stool
244
169
-
Glu
CTC
[ENA]
¢þ
>WENV180911968
ODRZ01001408
[ODRZ] human metagenome; G_DNA_Stool
263
346
+
Leu
CAG
[ENA]
¢þ
>WENV180911955
ODRZ01000726
[ODRZ] human metagenome; G_DNA_Stool
274
199
-
Ala
GGC
[ENA]
¢þ
>WENV180911976
ODRZ01002487
[ODRZ] human metagenome; G_DNA_Stool
279
364
+
Ser
TGA
[ENA]
¢þ
>WENV180911979
ODRZ01002917
[ODRZ] human metagenome; G_DNA_Stool
296
370
+
Lys
CTT
[ENA]
¢þ
>WENV180911954
ODRZ01000693
[ODRZ] human metagenome; G_DNA_Stool
315
239
-
Pro
CGG
[ENA]
¢þ
>WENV180911974
ODRZ01001853
[ODRZ] human metagenome; G_DNA_Stool
334
249
-
Ser
TGA
[ENA]
¢þ
>WENV180911961
ODRZ01001199
[ODRZ] human metagenome; G_DNA_Stool
358
431
+
Thr
GGT
[ENA]
¢þ
>WENV180911963
ODRZ01001268
[ODRZ] human metagenome; G_DNA_Stool
366
441
+
Trp
CCA
[ENA]
¢þ
>WENV180911938
ODRZ01000061
[ODRZ] human metagenome; G_DNA_Stool
381
311
-
Met
CAT
[ENA]
¢þ
>WENV180911943
ODRZ01000316
[ODRZ] human metagenome; G_DNA_Stool
384
458
+
Asp
GTC
[ENA]
¢þ
>WENV180911973
ODRZ01001853
[ODRZ] human metagenome; G_DNA_Stool
440
358
-
Tyr
GTA
[ENA]
¢þ
>WENV180911966
ODRZ01001403
[ODRZ] human metagenome; G_DNA_Stool
452
380
-
Gln
CTG
[ENA]
¢þ
>WENV180911957
ODRZ01001011
[ODRZ] human metagenome; G_DNA_Stool
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180911959
ODRZ01001097
[ODRZ] human metagenome; G_DNA_Stool
484
557
+
Asn
GTT
[ENA]
¢þ
>WENV180911971
ODRZ01001663
[ODRZ] human metagenome; G_DNA_Stool
492
407
-
Ser
GGA
[ENA]
¢þ
>WENV180911962
ODRZ01001199
[ODRZ] human metagenome; G_DNA_Stool
496
570
+
Met
CAT
[ENA]
¢þ
>WENV180911944
ODRZ01000316
[ODRZ] human metagenome; G_DNA_Stool
519
594
+
Phe
GAA
[ENA]
¢þ
>WENV180911946
ODRZ01000353
[ODRZ] human metagenome; G_DNA_Stool
529
604
+
Lys
TTT
[ENA]
¢þ
>WENV180911969
ODRZ01001520
[ODRZ] human metagenome; G_DNA_Stool
545
470
-
Asn
GTT
[ENA]
¢þ
>WENV180911936
ODRZ01000059
[ODRZ] human metagenome; G_DNA_Stool
548
618
+
Val
TAC
[ENA]
¢þ
>WENV180911953
ODRZ01000587
[ODRZ] human metagenome; G_DNA_Stool
555
481
-
Lys
TTT
[ENA]
¢þ
>WENV180911951
ODRZ01000538
[ODRZ] human metagenome; G_DNA_Stool
632
715
+
Leu
TAG
[ENA]
¢þ
>WENV180911950
ODRZ01000494
[ODRZ] human metagenome; G_DNA_Stool
709
782
+
Ala
GGC
[ENA]
¢þ
>WENV180911952
ODRZ01000553
[ODRZ] human metagenome; G_DNA_Stool
815
890
+
His
GTG
[ENA]
¢þ
>WENV180911941
ODRZ01000151
[ODRZ] human metagenome; G_DNA_Stool
941
1016
+
Arg
TCT
[ENA]
¢þ
>WENV180911949
ODRZ01000482
[ODRZ] human metagenome; G_DNA_Stool
1069
996
-
Arg
CCT
[ENA]
¢þ
>WENV180911947
ODRZ01000353
[ODRZ] human metagenome; G_DNA_Stool
1209
1136
-
Thr
TGT
[ENA]
¢þ
>WENV180911945
ODRZ01000318
[ODRZ] human metagenome; G_DNA_Stool
1263
1188
-
Ala
TGC
[ENA]
¢þ
>WENV180911942
ODRZ01000219
[ODRZ] human metagenome; G_DNA_Stool
1359
1284
-
Thr
CGT
[ENA]
¢þ
>WENV180911937
ODRZ01000061
[ODRZ] human metagenome; G_DNA_Stool
1607
1680
+
His
GTG
[ENA]
¢þ
>WENV180911934
ODRZ01000038
[ODRZ] human metagenome; G_DNA_Stool
1632
1716
+
Leu
TAG
[ENA]
¢þ
>WENV180911940
ODRZ01000143
[ODRZ] human metagenome; G_DNA_Stool
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180911939
ODRZ01000063
[ODRZ] human metagenome; G_DNA_Stool
1966
2053
+
Ser
CGA
[ENA]
¢þ
>WENV180911935
ODRZ01000038
[ODRZ] human metagenome; G_DNA_Stool
2093
2168
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK