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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180912045
ODSA01006125
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
31
104
+
Val
CAC
[ENA]
¢þ
>WENV180912055
ODSA01009834
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
33
106
+
Gln
TTG
[ENA]
¢þ
>WENV180912037
ODSA01002415
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
36
108
+
Val
GAC
[ENA]
¢þ
>WENV180912047
ODSA01006723
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
43
117
+
Glu
TTC
[ENA]
¢þ
>WENV180912022
ODSA01001199
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
75
157
+
Tyr
GTA
[ENA]
¢þ
>WENV180912032
ODSA01001582
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
81
7
-
Val
TAC
[ENA]
¢þ
>WENV180912052
ODSA01008646
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
92
167
+
Thr
CGT
[ENA]
¢þ
>WENV180912054
ODSA01009597
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
101
25
-
fMet
CAT
[ENA]
¢þ
>WENV180912040
ODSA01002634
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
101
28
-
Arg
ACG
[ENA]
¢þ
>WENV180912051
ODSA01008183
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180912056
ODSA01009834
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
118
190
+
Cys
GCA
[ENA]
¢þ
>WENV180912018
ODSA01000726
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
120
45
-
Glu
TTC
[ENA]
¢þ
>WENV180912048
ODSA01006723
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
122
197
+
Val
TAC
[ENA]
¢þ
>WENV180912027
ODSA01001346
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180911995
ODSA01000023
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
135
207
+
Asn
GTT
[ENA]
¢þ
>WENV180912049
ODSA01007775
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
138
64
-
Pro
GGG
[ENA]
¢þ
>WENV180912053
ODSA01008728
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
146
73
-
Gly
TCC
[ENA]
¢þ
>WENV180912034
ODSA01001721
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
173
247
+
Ala
TGC
[ENA]
¢þ
>WENV180912039
ODSA01002602
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
178
253
+
Thr
TGT
[ENA]
¢þ
>WENV180912046
ODSA01006503
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
180
88
-
Ser
TGA
[ENA]
¢þ
>WENV180912010
ODSA01000429
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
196
122
-
Ala
TGC
[ENA]
¢þ
>WENV180912050
ODSA01008183
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
211
123
-
Leu
TAA
[ENA]
¢þ
>WENV180912020
ODSA01001032
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
217
290
+
Trp
CCA
[ENA]
¢þ
>WENV180912044
ODSA01003947
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
226
142
-
Leu
TAG
[ENA]
¢þ
>WENV180912026
ODSA01001346
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
230
157
-
Gly
GCC
[ENA]
¢þ
>WENV180912042
ODSA01003389
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
231
303
+
Thr
GGT
[ENA]
¢þ
>WENV180912043
ODSA01003907
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
234
310
+
Ile2
CAT
[ENA]
¢þ
>WENV180912029
ODSA01001403
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
244
169
-
Glu
CTC
[ENA]
¢þ
>WENV180912030
ODSA01001408
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
263
346
+
Leu
CAG
[ENA]
¢þ
>WENV180912017
ODSA01000726
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
274
199
-
Ala
GGC
[ENA]
¢þ
>WENV180912038
ODSA01002487
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
279
364
+
Ser
TGA
[ENA]
¢þ
>WENV180912041
ODSA01002917
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
296
370
+
Lys
CTT
[ENA]
¢þ
>WENV180912016
ODSA01000693
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
315
239
-
Pro
CGG
[ENA]
¢þ
>WENV180912036
ODSA01001853
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
334
249
-
Ser
TGA
[ENA]
¢þ
>WENV180912023
ODSA01001199
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
358
431
+
Thr
GGT
[ENA]
¢þ
>WENV180912025
ODSA01001268
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
366
441
+
Trp
CCA
[ENA]
¢þ
>WENV180912000
ODSA01000061
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
381
311
-
Met
CAT
[ENA]
¢þ
>WENV180912005
ODSA01000316
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
384
458
+
Asp
GTC
[ENA]
¢þ
>WENV180912035
ODSA01001853
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
440
358
-
Tyr
GTA
[ENA]
¢þ
>WENV180912028
ODSA01001403
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
452
380
-
Gln
CTG
[ENA]
¢þ
>WENV180912019
ODSA01001011
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180912021
ODSA01001097
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
484
557
+
Asn
GTT
[ENA]
¢þ
>WENV180912033
ODSA01001663
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
492
407
-
Ser
GGA
[ENA]
¢þ
>WENV180912024
ODSA01001199
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
496
570
+
Met
CAT
[ENA]
¢þ
>WENV180912006
ODSA01000316
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
519
594
+
Phe
GAA
[ENA]
¢þ
>WENV180912008
ODSA01000353
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
529
604
+
Lys
TTT
[ENA]
¢þ
>WENV180912031
ODSA01001520
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
545
470
-
Asn
GTT
[ENA]
¢þ
>WENV180911998
ODSA01000059
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
548
618
+
Val
TAC
[ENA]
¢þ
>WENV180912015
ODSA01000587
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
555
481
-
Lys
TTT
[ENA]
¢þ
>WENV180912013
ODSA01000538
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
632
715
+
Leu
TAG
[ENA]
¢þ
>WENV180912012
ODSA01000494
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
709
782
+
Ala
GGC
[ENA]
¢þ
>WENV180912014
ODSA01000553
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
815
890
+
His
GTG
[ENA]
¢þ
>WENV180912003
ODSA01000151
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
941
1016
+
Arg
TCT
[ENA]
¢þ
>WENV180912011
ODSA01000482
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
1069
996
-
Arg
CCT
[ENA]
¢þ
>WENV180912009
ODSA01000353
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
1209
1136
-
Thr
TGT
[ENA]
¢þ
>WENV180912007
ODSA01000318
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
1263
1188
-
Ala
TGC
[ENA]
¢þ
>WENV180912004
ODSA01000219
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
1359
1284
-
Thr
CGT
[ENA]
¢þ
>WENV180911999
ODSA01000061
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
1607
1680
+
His
GTG
[ENA]
¢þ
>WENV180911996
ODSA01000038
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
1632
1716
+
Leu
TAG
[ENA]
¢þ
>WENV180912002
ODSA01000143
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180912001
ODSA01000063
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
1966
2053
+
Ser
CGA
[ENA]
¢þ
>WENV180911997
ODSA01000038
[ODSA] human metagenome; G_DNA_R_Retroauricular crease
2093
2168
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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