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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[ODSI] human metagenome; G_DNA_Vaginal introitus
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180912541
ODSI01006125
[ODSI] human metagenome; G_DNA_Vaginal introitus
31
104
+
Val
CAC
[ENA]
¢þ
>WENV180912551
ODSI01009834
[ODSI] human metagenome; G_DNA_Vaginal introitus
33
106
+
Gln
TTG
[ENA]
¢þ
>WENV180912533
ODSI01002415
[ODSI] human metagenome; G_DNA_Vaginal introitus
36
108
+
Val
GAC
[ENA]
¢þ
>WENV180912543
ODSI01006723
[ODSI] human metagenome; G_DNA_Vaginal introitus
43
117
+
Glu
TTC
[ENA]
¢þ
>WENV180912518
ODSI01001199
[ODSI] human metagenome; G_DNA_Vaginal introitus
75
157
+
Tyr
GTA
[ENA]
¢þ
>WENV180912528
ODSI01001582
[ODSI] human metagenome; G_DNA_Vaginal introitus
81
7
-
Val
TAC
[ENA]
¢þ
>WENV180912548
ODSI01008646
[ODSI] human metagenome; G_DNA_Vaginal introitus
92
167
+
Thr
CGT
[ENA]
¢þ
>WENV180912550
ODSI01009597
[ODSI] human metagenome; G_DNA_Vaginal introitus
101
25
-
fMet
CAT
[ENA]
¢þ
>WENV180912536
ODSI01002634
[ODSI] human metagenome; G_DNA_Vaginal introitus
101
28
-
Arg
ACG
[ENA]
¢þ
>WENV180912547
ODSI01008183
[ODSI] human metagenome; G_DNA_Vaginal introitus
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180912552
ODSI01009834
[ODSI] human metagenome; G_DNA_Vaginal introitus
118
190
+
Cys
GCA
[ENA]
¢þ
>WENV180912514
ODSI01000726
[ODSI] human metagenome; G_DNA_Vaginal introitus
120
45
-
Glu
TTC
[ENA]
¢þ
>WENV180912544
ODSI01006723
[ODSI] human metagenome; G_DNA_Vaginal introitus
122
197
+
Val
TAC
[ENA]
¢þ
>WENV180912523
ODSI01001346
[ODSI] human metagenome; G_DNA_Vaginal introitus
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180912491
ODSI01000023
[ODSI] human metagenome; G_DNA_Vaginal introitus
135
207
+
Asn
GTT
[ENA]
¢þ
>WENV180912545
ODSI01007775
[ODSI] human metagenome; G_DNA_Vaginal introitus
138
64
-
Pro
GGG
[ENA]
¢þ
>WENV180912549
ODSI01008728
[ODSI] human metagenome; G_DNA_Vaginal introitus
146
73
-
Gly
TCC
[ENA]
¢þ
>WENV180912530
ODSI01001721
[ODSI] human metagenome; G_DNA_Vaginal introitus
173
247
+
Ala
TGC
[ENA]
¢þ
>WENV180912535
ODSI01002602
[ODSI] human metagenome; G_DNA_Vaginal introitus
178
253
+
Thr
TGT
[ENA]
¢þ
>WENV180912542
ODSI01006503
[ODSI] human metagenome; G_DNA_Vaginal introitus
180
88
-
Ser
TGA
[ENA]
¢þ
>WENV180912506
ODSI01000429
[ODSI] human metagenome; G_DNA_Vaginal introitus
196
122
-
Ala
TGC
[ENA]
¢þ
>WENV180912546
ODSI01008183
[ODSI] human metagenome; G_DNA_Vaginal introitus
211
123
-
Leu
TAA
[ENA]
¢þ
>WENV180912516
ODSI01001032
[ODSI] human metagenome; G_DNA_Vaginal introitus
217
290
+
Trp
CCA
[ENA]
¢þ
>WENV180912540
ODSI01003947
[ODSI] human metagenome; G_DNA_Vaginal introitus
226
142
-
Leu
TAG
[ENA]
¢þ
>WENV180912522
ODSI01001346
[ODSI] human metagenome; G_DNA_Vaginal introitus
230
157
-
Gly
GCC
[ENA]
¢þ
>WENV180912538
ODSI01003389
[ODSI] human metagenome; G_DNA_Vaginal introitus
231
303
+
Thr
GGT
[ENA]
¢þ
>WENV180912539
ODSI01003907
[ODSI] human metagenome; G_DNA_Vaginal introitus
234
310
+
Ile2
CAT
[ENA]
¢þ
>WENV180912525
ODSI01001403
[ODSI] human metagenome; G_DNA_Vaginal introitus
244
169
-
Glu
CTC
[ENA]
¢þ
>WENV180912526
ODSI01001408
[ODSI] human metagenome; G_DNA_Vaginal introitus
263
346
+
Leu
CAG
[ENA]
¢þ
>WENV180912513
ODSI01000726
[ODSI] human metagenome; G_DNA_Vaginal introitus
274
199
-
Ala
GGC
[ENA]
¢þ
>WENV180912534
ODSI01002487
[ODSI] human metagenome; G_DNA_Vaginal introitus
279
364
+
Ser
TGA
[ENA]
¢þ
>WENV180912537
ODSI01002917
[ODSI] human metagenome; G_DNA_Vaginal introitus
296
370
+
Lys
CTT
[ENA]
¢þ
>WENV180912512
ODSI01000693
[ODSI] human metagenome; G_DNA_Vaginal introitus
315
239
-
Pro
CGG
[ENA]
¢þ
>WENV180912532
ODSI01001853
[ODSI] human metagenome; G_DNA_Vaginal introitus
334
249
-
Ser
TGA
[ENA]
¢þ
>WENV180912519
ODSI01001199
[ODSI] human metagenome; G_DNA_Vaginal introitus
358
431
+
Thr
GGT
[ENA]
¢þ
>WENV180912521
ODSI01001268
[ODSI] human metagenome; G_DNA_Vaginal introitus
366
441
+
Trp
CCA
[ENA]
¢þ
>WENV180912496
ODSI01000061
[ODSI] human metagenome; G_DNA_Vaginal introitus
381
311
-
Met
CAT
[ENA]
¢þ
>WENV180912501
ODSI01000316
[ODSI] human metagenome; G_DNA_Vaginal introitus
384
458
+
Asp
GTC
[ENA]
¢þ
>WENV180912531
ODSI01001853
[ODSI] human metagenome; G_DNA_Vaginal introitus
440
358
-
Tyr
GTA
[ENA]
¢þ
>WENV180912524
ODSI01001403
[ODSI] human metagenome; G_DNA_Vaginal introitus
452
380
-
Gln
CTG
[ENA]
¢þ
>WENV180912515
ODSI01001011
[ODSI] human metagenome; G_DNA_Vaginal introitus
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180912517
ODSI01001097
[ODSI] human metagenome; G_DNA_Vaginal introitus
484
557
+
Asn
GTT
[ENA]
¢þ
>WENV180912529
ODSI01001663
[ODSI] human metagenome; G_DNA_Vaginal introitus
492
407
-
Ser
GGA
[ENA]
¢þ
>WENV180912520
ODSI01001199
[ODSI] human metagenome; G_DNA_Vaginal introitus
496
570
+
Met
CAT
[ENA]
¢þ
>WENV180912502
ODSI01000316
[ODSI] human metagenome; G_DNA_Vaginal introitus
519
594
+
Phe
GAA
[ENA]
¢þ
>WENV180912504
ODSI01000353
[ODSI] human metagenome; G_DNA_Vaginal introitus
529
604
+
Lys
TTT
[ENA]
¢þ
>WENV180912527
ODSI01001520
[ODSI] human metagenome; G_DNA_Vaginal introitus
545
470
-
Asn
GTT
[ENA]
¢þ
>WENV180912494
ODSI01000059
[ODSI] human metagenome; G_DNA_Vaginal introitus
548
618
+
Val
TAC
[ENA]
¢þ
>WENV180912511
ODSI01000587
[ODSI] human metagenome; G_DNA_Vaginal introitus
555
481
-
Lys
TTT
[ENA]
¢þ
>WENV180912509
ODSI01000538
[ODSI] human metagenome; G_DNA_Vaginal introitus
632
715
+
Leu
TAG
[ENA]
¢þ
>WENV180912508
ODSI01000494
[ODSI] human metagenome; G_DNA_Vaginal introitus
709
782
+
Ala
GGC
[ENA]
¢þ
>WENV180912510
ODSI01000553
[ODSI] human metagenome; G_DNA_Vaginal introitus
815
890
+
His
GTG
[ENA]
¢þ
>WENV180912499
ODSI01000151
[ODSI] human metagenome; G_DNA_Vaginal introitus
941
1016
+
Arg
TCT
[ENA]
¢þ
>WENV180912507
ODSI01000482
[ODSI] human metagenome; G_DNA_Vaginal introitus
1069
996
-
Arg
CCT
[ENA]
¢þ
>WENV180912505
ODSI01000353
[ODSI] human metagenome; G_DNA_Vaginal introitus
1209
1136
-
Thr
TGT
[ENA]
¢þ
>WENV180912503
ODSI01000318
[ODSI] human metagenome; G_DNA_Vaginal introitus
1263
1188
-
Ala
TGC
[ENA]
¢þ
>WENV180912500
ODSI01000219
[ODSI] human metagenome; G_DNA_Vaginal introitus
1359
1284
-
Thr
CGT
[ENA]
¢þ
>WENV180912495
ODSI01000061
[ODSI] human metagenome; G_DNA_Vaginal introitus
1607
1680
+
His
GTG
[ENA]
¢þ
>WENV180912492
ODSI01000038
[ODSI] human metagenome; G_DNA_Vaginal introitus
1632
1716
+
Leu
TAG
[ENA]
¢þ
>WENV180912498
ODSI01000143
[ODSI] human metagenome; G_DNA_Vaginal introitus
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180912497
ODSI01000063
[ODSI] human metagenome; G_DNA_Vaginal introitus
1966
2053
+
Ser
CGA
[ENA]
¢þ
>WENV180912493
ODSI01000038
[ODSI] human metagenome; G_DNA_Vaginal introitus
2093
2168
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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