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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[ODSX] human metagenome; G_DNA_Anterior nares
HIT:
63 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180914496
ODSX01001576
[ODSX] human metagenome; G_DNA_Anterior nares
46
118
+
Val
TAC
[ENA]
¢þ
>WENV180914506
ODSX01004985
[ODSX] human metagenome; G_DNA_Anterior nares
73
148
+
Lys
TTT
[ENA]
¢þ
>WENV180914501
ODSX01002437
[ODSX] human metagenome; G_DNA_Anterior nares
81
155
+
Leu
CAA
[ENA]
¢þ
>WENV180914484
ODSX01000769
[ODSX] human metagenome; G_DNA_Anterior nares
84
9
-
Asp
GTC
[ENA]
¢þ
>WENV180914502
ODSX01002466
[ODSX] human metagenome; G_DNA_Anterior nares
91
17
-
Leu
TAA
[ENA]
¢þ
>WENV180914473
ODSX01000063
[ODSX] human metagenome; G_DNA_Anterior nares
97
172
+
Trp
CCA
[ENA]
¢þ
>WENV180914493
ODSX01001088
[ODSX] human metagenome; G_DNA_Anterior nares
99
24
-
Gly
GCC
[ENA]
¢þ
>WENV180914500
ODSX01001722
[ODSX] human metagenome; G_DNA_Anterior nares
110
37
-
Thr
TGT
[ENA]
¢þ
>WENV180914488
ODSX01000810
[ODSX] human metagenome; G_DNA_Anterior nares
114
41
-
Gln
TTG
[ENA]
¢þ
>WENV180914478
ODSX01000318
[ODSX] human metagenome; G_DNA_Anterior nares
118
33
-
Leu
CAG
[ENA]
¢þ
>WENV180914497
ODSX01001576
[ODSX] human metagenome; G_DNA_Anterior nares
128
200
+
Lys
TTT
[ENA]
¢þ
>WENV180914490
ODSX01000865
[ODSX] human metagenome; G_DNA_Anterior nares
146
219
+
Arg
CCT
[ENA]
¢þ
>WENV180914504
ODSX01003194
[ODSX] human metagenome; G_DNA_Anterior nares
149
75
-
Pro
GGG
[ENA]
¢þ
>WENV180914494
ODSX01001111
[ODSX] human metagenome; G_DNA_Anterior nares
154
70
-
Leu
GAG
[ENA]
¢þ
>WENV180914481
ODSX01000560
[ODSX] human metagenome; G_DNA_Anterior nares
159
88
-
Gly
GCC
[ENA]
¢þ
>WENV180914479
ODSX01000526
[ODSX] human metagenome; G_DNA_Anterior nares
168
78
-
Ser
TGA
[ENA]
¢þ
>WENV180914503
ODSX01002679
[ODSX] human metagenome; G_DNA_Anterior nares
171
244
+
Trp
CCA
[ENA]
¢þ
>WENV180914483
ODSX01000769
[ODSX] human metagenome; G_DNA_Anterior nares
197
108
-
Ser
TGA
[ENA]
¢þ
>WENV180914487
ODSX01000810
[ODSX] human metagenome; G_DNA_Anterior nares
203
129
-
His
GTG
[ENA]
¢þ
>WENV180914492
ODSX01001088
[ODSX] human metagenome; G_DNA_Anterior nares
209
137
-
Val
GAC
[ENA]
¢þ
>WENV180914498
ODSX01001576
[ODSX] human metagenome; G_DNA_Anterior nares
218
299
+
Leu
TAG
[ENA]
¢þ
>WENV180914505
ODSX01003293
[ODSX] human metagenome; G_DNA_Anterior nares
219
145
-
Val
TAC
[ENA]
¢þ
>WENV180914495
ODSX01001183
[ODSX] human metagenome; G_DNA_Anterior nares
227
302
+
Val
TAC
[ENA]
¢þ
>WENV180914499
ODSX01001635
[ODSX] human metagenome; G_DNA_Anterior nares
227
316
+
Ser
GGA
[ENA]
¢þ
>WENV180914480
ODSX01000560
[ODSX] human metagenome; G_DNA_Anterior nares
247
175
-
Thr
TGT
[ENA]
¢þ
>WENV180914482
ODSX01000769
[ODSX] human metagenome; G_DNA_Anterior nares
279
208
-
Glu
TTC
[ENA]
¢þ
>WENV180914486
ODSX01000810
[ODSX] human metagenome; G_DNA_Anterior nares
285
213
-
Trp
CCA
[ENA]
¢þ
>WENV180914491
ODSX01001088
[ODSX] human metagenome; G_DNA_Anterior nares
307
236
-
Cys
GCA
[ENA]
¢þ
>WENV180914489
ODSX01000825
[ODSX] human metagenome; G_DNA_Anterior nares
311
237
-
Pro
TGG
[ENA]
¢þ
>WENV180914461
ODSX01000012
[ODSX] human metagenome; G_DNA_Anterior nares
315
239
-
Met
CAT
[ENA]
¢þ
>WENV180914485
ODSX01000810
[ODSX] human metagenome; G_DNA_Anterior nares
370
288
-
Tyr
GTA
[ENA]
¢þ
>WENV180914477
ODSX01000246
[ODSX] human metagenome; G_DNA_Anterior nares
584
499
-
Ser
TGA
[ENA]
¢þ
>WENV180914475
ODSX01000072
[ODSX] human metagenome; G_DNA_Anterior nares
1862
1938
+
Ile
GAT
[ENA]
¢þ
>WENV180914476
ODSX01000072
[ODSX] human metagenome; G_DNA_Anterior nares
1943
2018
+
Ala
TGC
[ENA]
¢þ
>WENV180914472
ODSX01000055
[ODSX] human metagenome; G_DNA_Anterior nares
2855
2780
-
Gly
GCC
[ENA]
¢þ
>WENV180914456
ODSX01000006
[ODSX] human metagenome; G_DNA_Anterior nares
3719
3629
-
Ser
GGA
[ENA]
¢þ
>WENV180914466
ODSX01000033
[ODSX] human metagenome; G_DNA_Anterior nares
4183
4267
+
Leu
TAG
[ENA]
¢þ
>WENV180914474
ODSX01000068
[ODSX] human metagenome; G_DNA_Anterior nares
6097
6011
-
Leu
CAA
[ENA]
¢þ
>WENV180914467
ODSX01000035
[ODSX] human metagenome; G_DNA_Anterior nares
6119
6044
-
Glu
TTC
[ENA]
¢þ
>WENV180914459
ODSX01000011
[ODSX] human metagenome; G_DNA_Anterior nares
10425
10350
-
Asn
GTT
[ENA]
¢þ
>WENV180914464
ODSX01000021
[ODSX] human metagenome; G_DNA_Anterior nares
11122
11046
-
fMet
CAT
[ENA]
¢þ
>WENV180914463
ODSX01000021
[ODSX] human metagenome; G_DNA_Anterior nares
11380
11296
-
Leu
GAG
[ENA]
¢þ
>WENV180914458
ODSX01000010
[ODSX] human metagenome; G_DNA_Anterior nares
11454
11378
-
Val
GAC
[ENA]
¢þ
>WENV180914457
ODSX01000007
[ODSX] human metagenome; G_DNA_Anterior nares
11657
11732
+
Gln
TTG
[ENA]
¢þ
>WENV180914468
ODSX01000046
[ODSX] human metagenome; G_DNA_Anterior nares
12041
12116
+
Thr
TGT
[ENA]
¢þ
>WENV180914469
ODSX01000046
[ODSX] human metagenome; G_DNA_Anterior nares
12198
12281
+
Tyr
GTA
[ENA]
¢þ
>WENV180914470
ODSX01000046
[ODSX] human metagenome; G_DNA_Anterior nares
12308
12381
+
Gly
TCC
[ENA]
¢þ
>WENV180914471
ODSX01000046
[ODSX] human metagenome; G_DNA_Anterior nares
12394
12468
+
Thr
GGT
[ENA]
¢þ
>WENV180914445
ODSX01000002
[ODSX] human metagenome; G_DNA_Anterior nares
12786
12700
-
Leu
TAA
[ENA]
¢þ
>WENV180914444
ODSX01000002
[ODSX] human metagenome; G_DNA_Anterior nares
12905
12832
-
Cys
GCA
[ENA]
¢þ
>WENV180914449
ODSX01000003
[ODSX] human metagenome; G_DNA_Anterior nares
13641
13566
-
Phe
GAA
[ENA]
¢þ
>WENV180914455
ODSX01000005
[ODSX] human metagenome; G_DNA_Anterior nares
14538
14462
-
Arg
CCG
[ENA]
¢þ
>WENV180914460
ODSX01000012
[ODSX] human metagenome; G_DNA_Anterior nares
16959
16884
-
Gly
GCC
[ENA]
¢þ
>WENV180914465
ODSX01000024
[ODSX] human metagenome; G_DNA_Anterior nares
20455
20379
-
Asp
GTC
[ENA]
¢þ
>WENV180914462
ODSX01000021
[ODSX] human metagenome; G_DNA_Anterior nares
22216
22291
+
Ala
GGC
[ENA]
¢þ
>WENV180914454
ODSX01000005
[ODSX] human metagenome; G_DNA_Anterior nares
36883
36807
-
Ile2
CAT
[ENA]
¢þ
>WENV180914453
ODSX01000005
[ODSX] human metagenome; G_DNA_Anterior nares
37020
36936
-
Leu
TAG
[ENA]
¢þ
>WENV180914450
ODSX01000005
[ODSX] human metagenome; G_DNA_Anterior nares
38586
38662
+
Pro
TGG
[ENA]
¢þ
>WENV180914451
ODSX01000005
[ODSX] human metagenome; G_DNA_Anterior nares
38716
38792
+
Arg
TCT
[ENA]
¢þ
>WENV180914452
ODSX01000005
[ODSX] human metagenome; G_DNA_Anterior nares
38811
38886
+
His
GTG
[ENA]
¢þ
>WENV180914446
ODSX01000003
[ODSX] human metagenome; G_DNA_Anterior nares
57313
57389
+
Pro
GGG
[ENA]
¢þ
>WENV180914448
ODSX01000003
[ODSX] human metagenome; G_DNA_Anterior nares
70723
70647
-
Arg
ACG
[ENA]
¢þ
>WENV180914447
ODSX01000003
[ODSX] human metagenome; G_DNA_Anterior nares
70929
70838
-
Ser
GCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK