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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[ODVZ] human metagenome; G_DNA_Posterior fornix
HIT:
64 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181005789
ODVZ01001624
[ODVZ] human metagenome; G_DNA_Posterior fornix
1
89
+
Leu
TAA
[ENA]
¢þ
>WENV181005777
ODVZ01000354
[ODVZ] human metagenome; G_DNA_Posterior fornix
40
114
+
Val
TAC
[ENA]
¢þ
>WENV181005796
ODVZ01002462
[ODVZ] human metagenome; G_DNA_Posterior fornix
59
134
+
Phe
GAA
[ENA]
¢þ
>WENV181005800
ODVZ01005064
[ODVZ] human metagenome; G_DNA_Posterior fornix
60
134
+
Phe
GAA
[ENA]
¢þ
>WENV181005769
ODVZ01000078
[ODVZ] human metagenome; G_DNA_Posterior fornix
60
143
+
Tyr
GTA
[ENA]
¢þ
>WENV181005792
ODVZ01001658
[ODVZ] human metagenome; G_DNA_Posterior fornix
84
159
+
Met
CAT
[ENA]
¢þ
>WENV181005790
ODVZ01001624
[ODVZ] human metagenome; G_DNA_Posterior fornix
94
169
+
fMet
CAT
[ENA]
¢þ
>WENV181005799
ODVZ01003239
[ODVZ] human metagenome; G_DNA_Posterior fornix
110
199
+
Ser
GGA
[ENA]
¢þ
>WENV181005794
ODVZ01002001
[ODVZ] human metagenome; G_DNA_Posterior fornix
116
192
+
Arg
TCT
[ENA]
¢þ
>WENV181005778
ODVZ01000354
[ODVZ] human metagenome; G_DNA_Posterior fornix
118
190
+
Lys
TTT
[ENA]
¢þ
>WENV181005784
ODVZ01000400
[ODVZ] human metagenome; G_DNA_Posterior fornix
123
215
+
Ser
GGA
[ENA]
¢þ
>WENV181005798
ODVZ01003069
[ODVZ] human metagenome; G_DNA_Posterior fornix
128
38
-
Ser
TGA
[ENA]
¢þ
>WENV181005797
ODVZ01002462
[ODVZ] human metagenome; G_DNA_Posterior fornix
139
213
+
Cys
GCA
[ENA]
¢þ
>WENV181005770
ODVZ01000078
[ODVZ] human metagenome; G_DNA_Posterior fornix
146
218
+
Trp
CCA
[ENA]
¢þ
>WENV181005783
ODVZ01000371
[ODVZ] human metagenome; G_DNA_Posterior fornix
160
85
-
Lys
TTT
[ENA]
¢þ
>WENV181005793
ODVZ01001658
[ODVZ] human metagenome; G_DNA_Posterior fornix
171
246
+
Ile2
CAT
[ENA]
¢þ
>WENV181005791
ODVZ01001624
[ODVZ] human metagenome; G_DNA_Posterior fornix
174
250
+
Met
CAT
[ENA]
¢þ
>WENV181005788
ODVZ01000557
[ODVZ] human metagenome; G_DNA_Posterior fornix
195
121
-
Ala
TGC
[ENA]
¢þ
>WENV181005795
ODVZ01002001
[ODVZ] human metagenome; G_DNA_Posterior fornix
197
272
+
His
GTG
[ENA]
¢þ
>WENV181005779
ODVZ01000354
[ODVZ] human metagenome; G_DNA_Posterior fornix
203
286
+
Leu
TAG
[ENA]
¢þ
>WENV181005771
ODVZ01000078
[ODVZ] human metagenome; G_DNA_Posterior fornix
230
303
+
His
GTG
[ENA]
¢þ
>WENV181005772
ODVZ01000078
[ODVZ] human metagenome; G_DNA_Posterior fornix
309
382
+
Gln
TTG
[ENA]
¢þ
>WENV181005780
ODVZ01000354
[ODVZ] human metagenome; G_DNA_Posterior fornix
309
383
+
Thr
TGT
[ENA]
¢þ
>WENV181005787
ODVZ01000557
[ODVZ] human metagenome; G_DNA_Posterior fornix
325
251
-
Ile
GAT
[ENA]
¢þ
>WENV181005781
ODVZ01000354
[ODVZ] human metagenome; G_DNA_Posterior fornix
393
464
+
Gly
GCC
[ENA]
¢þ
>WENV181005773
ODVZ01000078
[ODVZ] human metagenome; G_DNA_Posterior fornix
405
475
+
Cys
GCA
[ENA]
¢þ
>WENV181005786
ODVZ01000423
[ODVZ] human metagenome; G_DNA_Posterior fornix
438
353
-
Tyr
GTA
[ENA]
¢þ
>WENV181005782
ODVZ01000354
[ODVZ] human metagenome; G_DNA_Posterior fornix
476
561
+
Leu
TAA
[ENA]
¢þ
>WENV181005774
ODVZ01000078
[ODVZ] human metagenome; G_DNA_Posterior fornix
516
602
+
Leu
CAA
[ENA]
¢þ
>WENV181005785
ODVZ01000423
[ODVZ] human metagenome; G_DNA_Posterior fornix
519
444
-
Thr
TGT
[ENA]
¢þ
>WENV181005758
ODVZ01000068
[ODVZ] human metagenome; G_DNA_Posterior fornix
1017
1089
+
Glu
TTC
[ENA]
¢þ
>WENV181005759
ODVZ01000068
[ODVZ] human metagenome; G_DNA_Posterior fornix
1093
1167
+
Val
TAC
[ENA]
¢þ
>WENV181005775
ODVZ01000086
[ODVZ] human metagenome; G_DNA_Posterior fornix
1661
1587
-
Arg
CCT
[ENA]
¢þ
>WENV181005751
ODVZ01000034
[ODVZ] human metagenome; G_DNA_Posterior fornix
2038
1964
-
Lys
CTT
[ENA]
¢þ
>WENV181005750
ODVZ01000034
[ODVZ] human metagenome; G_DNA_Posterior fornix
2582
2508
-
Lys
CTT
[ENA]
¢þ
>WENV181005752
ODVZ01000035
[ODVZ] human metagenome; G_DNA_Posterior fornix
2696
2622
-
Thr
AGT
[ENA]
¢þ
>WENV181005766
ODVZ01000072
[ODVZ] human metagenome; G_DNA_Posterior fornix
4143
4069
-
Val
TAC
[ENA]
¢þ
>WENV181005765
ODVZ01000072
[ODVZ] human metagenome; G_DNA_Posterior fornix
4222
4147
-
His
GTG
[ENA]
¢þ
>WENV181005764
ODVZ01000072
[ODVZ] human metagenome; G_DNA_Posterior fornix
4303
4228
-
Asp
GTC
[ENA]
¢þ
>WENV181005763
ODVZ01000072
[ODVZ] human metagenome; G_DNA_Posterior fornix
4380
4305
-
fMet
CAT
[ENA]
¢þ
>WENV181005767
ODVZ01000074
[ODVZ] human metagenome; G_DNA_Posterior fornix
4397
4471
+
Arg
ACG
[ENA]
¢þ
>WENV181005757
ODVZ01000064
[ODVZ] human metagenome; G_DNA_Posterior fornix
4438
4365
-
Gln
TTG
[ENA]
¢þ
>WENV181005762
ODVZ01000072
[ODVZ] human metagenome; G_DNA_Posterior fornix
4477
4391
-
Ser
TGA
[ENA]
¢þ
>WENV181005768
ODVZ01000074
[ODVZ] human metagenome; G_DNA_Posterior fornix
4479
4552
+
Pro
TGG
[ENA]
¢þ
>WENV181005756
ODVZ01000064
[ODVZ] human metagenome; G_DNA_Posterior fornix
4553
4472
-
Tyr
GTA
[ENA]
¢þ
>WENV181005755
ODVZ01000063
[ODVZ] human metagenome; G_DNA_Posterior fornix
5032
5120
+
Ser
CGA
[ENA]
¢þ
>WENV181005776
ODVZ01000087
[ODVZ] human metagenome; G_DNA_Posterior fornix
5170
5243
+
Gln
TTG
[ENA]
¢þ
>WENV181005753
ODVZ01000036
[ODVZ] human metagenome; G_DNA_Posterior fornix
6391
6477
+
Leu
CAG
[ENA]
¢þ
>WENV181005740
ODVZ01000004
[ODVZ] human metagenome; G_DNA_Posterior fornix
6539
6614
+
Gln
TTG
[ENA]
¢þ
>WENV181005741
ODVZ01000004
[ODVZ] human metagenome; G_DNA_Posterior fornix
6713
6787
+
Asp
GTC
[ENA]
¢þ
>WENV181005761
ODVZ01000071
[ODVZ] human metagenome; G_DNA_Posterior fornix
10744
10653
-
Ser
GCT
[ENA]
¢þ
>WENV181005760
ODVZ01000071
[ODVZ] human metagenome; G_DNA_Posterior fornix
10821
10745
-
Ile
GAT
[ENA]
¢þ
>WENV181005739
ODVZ01000003
[ODVZ] human metagenome; G_DNA_Posterior fornix
12114
12189
+
Arg
TCT
[ENA]
¢þ
>WENV181005749
ODVZ01000032
[ODVZ] human metagenome; G_DNA_Posterior fornix
12745
12660
-
Leu
AAG
[ENA]
¢þ
>WENV181005754
ODVZ01000052
[ODVZ] human metagenome; G_DNA_Posterior fornix
15332
15260
-
Thr
GGT
[ENA]
¢þ
>WENV181005744
ODVZ01000010
[ODVZ] human metagenome; G_DNA_Posterior fornix
32059
32134
+
Thr
CGT
[ENA]
¢þ
>WENV181005748
ODVZ01000013
[ODVZ] human metagenome; G_DNA_Posterior fornix
34074
34001
-
Pro
CGG
[ENA]
¢þ
>WENV181005747
ODVZ01000013
[ODVZ] human metagenome; G_DNA_Posterior fornix
34185
34111
-
Gly
GCC
[ENA]
¢þ
>WENV181005746
ODVZ01000013
[ODVZ] human metagenome; G_DNA_Posterior fornix
34371
34297
-
Gly
GCC
[ENA]
¢þ
>WENV181005745
ODVZ01000013
[ODVZ] human metagenome; G_DNA_Posterior fornix
34557
34483
-
Gly
GCC
[ENA]
¢þ
>WENV181005742
ODVZ01000007
[ODVZ] human metagenome; G_DNA_Posterior fornix
36395
36468
+
Arg
CCG
[ENA]
¢þ
>WENV181005743
ODVZ01000009
[ODVZ] human metagenome; G_DNA_Posterior fornix
36781
36851
+
Gly
CCC
[ENA]
¢þ
>WENV181005738
ODVZ01000001
[ODVZ] human metagenome; G_DNA_Posterior fornix
63803
63731
-
Gln
CTG
[ENA]
¢þ
>WENV181005737
ODVZ01000001
[ODVZ] human metagenome; G_DNA_Posterior fornix
63881
63808
-
Glu
CTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK