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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
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|
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HOW TO USE
tRNA gene List
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
HIT:
106 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181032357
ODXM01001879
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
5
80
+
Asp
GTC
[ENA]
¢þ
>WENV181032373
ODXM01005254
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
33
106
+
Ile2
CAT
[ENA]
¢þ
>WENV181032362
ODXM01002557
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
36
111
+
Gly
GCC
[ENA]
¢þ
>WENV181032365
ODXM01003215
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
38
112
+
Gly
GCC
[ENA]
¢þ
>WENV181032338
ODXM01000219
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
41
114
+
Trp
CCA
[ENA]
¢þ
>WENV181032334
ODXM01000158
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
45
120
+
Trp
CCA
[ENA]
¢þ
>WENV181032386
ODXM01015640
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
75
156
+
Leu
TAG
[ENA]
¢þ
>WENV181032384
ODXM01011213
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
76
2
-
Ile2
CAT
[ENA]
¢þ
>WENV181032345
ODXM01000518
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
95
22
-
Gly
CCC
[ENA]
¢þ
>WENV181032390
ODXM01018036
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
95
170
+
His
GTG
[ENA]
¢þ
>WENV181032371
ODXM01004772
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
97
171
+
Pro
TGG
[ENA]
¢þ
>WENV181032378
ODXM01006560
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
111
36
-
Lys
TTT
[ENA]
¢þ
>WENV181032374
ODXM01005254
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
115
206
+
Ser
TGA
[ENA]
¢þ
>WENV181032385
ODXM01011646
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
116
189
+
Asn
GTT
[ENA]
¢þ
>WENV181032339
ODXM01000219
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
117
192
+
His
GTG
[ENA]
¢þ
>WENV181032331
ODXM01000056
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
122
48
-
Asn
GTT
[ENA]
¢þ
>WENV181032366
ODXM01003215
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
124
212
+
Leu
TAA
[ENA]
¢þ
>WENV181032363
ODXM01002557
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
128
199
+
Cys
GCA
[ENA]
¢þ
>WENV181032346
ODXM01000528
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
129
41
-
Ser
TGA
[ENA]
¢þ
>WENV181032353
ODXM01001416
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
145
217
+
Gly
TCC
[ENA]
¢þ
>WENV181032359
ODXM01001980
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
148
224
+
Ile
GAT
[ENA]
¢þ
>WENV181032387
ODXM01016937
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
149
78
-
Arg
CCG
[ENA]
¢þ
>WENV181032381
ODXM01008299
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
159
86
-
Cys
GCA
[ENA]
¢þ
>WENV181032383
ODXM01010439
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
163
91
-
Met
CAT
[ENA]
¢þ
>WENV181032358
ODXM01001952
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
165
92
-
Arg
TCT
[ENA]
¢þ
>WENV181032382
ODXM01008826
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
167
242
+
Glu
TTC
[ENA]
¢þ
>WENV181032379
ODXM01006887
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
173
85
-
Ser
GGA
[ENA]
¢þ
>WENV181032377
ODXM01006560
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
193
118
-
Thr
TGT
[ENA]
¢þ
>WENV181032388
ODXM01017103
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
193
120
-
Ala
TGC
[ENA]
¢þ
>WENV181032369
ODXM01003293
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
201
127
-
Ile2
CAT
[ENA]
¢þ
>WENV181032389
ODXM01017851
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
209
135
-
Ala
TGC
[ENA]
¢þ
>WENV181032340
ODXM01000219
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
210
283
+
Gly
TCC
[ENA]
¢þ
>WENV181032375
ODXM01005254
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
213
288
+
Asp
GTC
[ENA]
¢þ
>WENV181032364
ODXM01002557
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
217
291
+
Val
GAC
[ENA]
¢þ
>WENV181032367
ODXM01003215
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
225
299
+
Arg
ACG
[ENA]
¢þ
>WENV181032380
ODXM01008299
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
237
164
-
Gln
TTG
[ENA]
¢þ
>WENV181032351
ODXM01000924
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
244
333
+
Ser
CGA
[ENA]
¢þ
>WENV181032360
ODXM01001980
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
251
324
+
Ala
TGC
[ENA]
¢þ
>WENV181032370
ODXM01004210
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
251
341
+
Ser
GGA
[ENA]
¢þ
>WENV181032376
ODXM01006560
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
275
200
-
Val
TAC
[ENA]
¢þ
>WENV181032354
ODXM01001425
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
277
352
+
Thr
TGT
[ENA]
¢þ
>WENV181032372
ODXM01005036
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
288
214
-
Asn
GTT
[ENA]
¢þ
>WENV181032361
ODXM01002172
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
291
216
-
Arg
TCT
[ENA]
¢þ
>WENV181032368
ODXM01003215
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
308
382
+
Pro
TGG
[ENA]
¢þ
>WENV181032343
ODXM01000396
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
331
406
+
Arg
CCG
[ENA]
¢þ
>WENV181032356
ODXM01001695
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
388
315
-
His
GTG
[ENA]
¢þ
>WENV181032342
ODXM01000379
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
443
367
-
Pro
CGG
[ENA]
¢þ
>WENV181032348
ODXM01000695
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
456
528
+
Gln
CTG
[ENA]
¢þ
>WENV181032355
ODXM01001477
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
469
553
+
Leu
CAG
[ENA]
¢þ
>WENV181032352
ODXM01000997
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
524
608
+
Leu
TAG
[ENA]
¢þ
>WENV181032335
ODXM01000183
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
560
642
+
Tyr
GTA
[ENA]
¢þ
>WENV181032344
ODXM01000498
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
574
501
-
Ala
CGC
[ENA]
¢þ
>WENV181032349
ODXM01000695
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
634
709
+
Glu
CTC
[ENA]
¢þ
>WENV181032347
ODXM01000646
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
655
581
-
Leu
CAA
[ENA]
¢þ
>WENV181032350
ODXM01000896
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
715
642
-
Ala
GGC
[ENA]
¢þ
>WENV181032336
ODXM01000183
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
878
951
+
Thr
GGT
[ENA]
¢þ
>WENV181032341
ODXM01000366
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
943
870
-
Arg
CCT
[ENA]
¢þ
>WENV181032337
ODXM01000183
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
1057
1131
+
Met
CAT
[ENA]
¢þ
>WENV181032333
ODXM01000122
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
1222
1296
+
Leu
TAA
[ENA]
¢þ
>WENV181032332
ODXM01000100
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
1958
2030
+
Gln
TTG
[ENA]
¢þ
>WENV181032312
ODXM01000007
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
3010
2936
-
Leu
TAA
[ENA]
¢þ
>WENV181032330
ODXM01000053
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
3626
3540
-
Leu
GAG
[ENA]
¢þ
>WENV181032300
ODXM01000003
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
4996
4921
-
His
GTG
[ENA]
¢þ
>WENV181032296
ODXM01000003
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
7063
7138
+
Arg
TCT
[ENA]
¢þ
>WENV181032328
ODXM01000022
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
7948
8022
+
Lys
CTT
[ENA]
¢þ
>WENV181032329
ODXM01000022
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
12883
12966
+
Leu
TAG
[ENA]
¢þ
>WENV181032307
ODXM01000005
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
20151
20077
-
Pro
GGG
[ENA]
¢þ
>WENV181032311
ODXM01000007
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
22246
22167
-
Gln
TTG
[ENA]
¢þ
>WENV181032323
ODXM01000014
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
24879
24951
+
Arg
CCG
[ENA]
¢þ
>WENV181032325
ODXM01000016
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
32175
32247
+
Gln
CTG
[ENA]
¢þ
>WENV181032326
ODXM01000016
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
32383
32458
+
Glu
CTC
[ENA]
¢þ
>WENV181032297
ODXM01000003
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
39689
39764
+
Pro
TGG
[ENA]
¢þ
>WENV181032327
ODXM01000016
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
41867
41793
-
Val
TAC
[ENA]
¢þ
>WENV181032324
ODXM01000014
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
45934
46010
+
fMet
CAT
[ENA]
¢þ
>WENV181032310
ODXM01000007
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
58292
58219
-
Ala
CGC
[ENA]
¢þ
>WENV181032298
ODXM01000003
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
58835
58908
+
Gly
TCC
[ENA]
¢þ
>WENV181032288
ODXM01000001
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
59457
59373
-
Leu
CAA
[ENA]
¢þ
>WENV181032318
ODXM01000010
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
62012
61938
-
Lys
TTT
[ENA]
¢þ
>WENV181032322
ODXM01000011
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
63722
63649
-
Trp
CCA
[ENA]
¢þ
>WENV181032315
ODXM01000010
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
63825
63899
+
Glu
TTC
[ENA]
¢þ
>WENV181032316
ODXM01000010
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
64311
64385
+
Asp
GTC
[ENA]
¢þ
>WENV181032317
ODXM01000010
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
64446
64521
+
Phe
GAA
[ENA]
¢þ
>WENV181032308
ODXM01000007
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
65815
65888
+
Arg
CCT
[ENA]
¢þ
>WENV181032321
ODXM01000011
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
67788
67714
-
Met
CAT
[ENA]
¢þ
>WENV181032320
ODXM01000011
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
67926
67853
-
Thr
GGT
[ENA]
¢þ
>WENV181032319
ODXM01000011
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
68209
68127
-
Tyr
GTA
[ENA]
¢þ
>WENV181032289
ODXM01000002
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
76574
76647
+
Gly
CCC
[ENA]
¢þ
>WENV181032314
ODXM01000009
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
90575
90501
-
Ala
TGC
[ENA]
¢þ
>WENV181032313
ODXM01000008
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
116340
116414
+
Ile
GAT
[ENA]
¢þ
>WENV181032309
ODXM01000007
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
116836
116761
-
Thr
TGT
[ENA]
¢þ
>WENV181032302
ODXM01000004
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
126020
125945
-
Thr
CGT
[ENA]
¢þ
>WENV181032285
ODXM01000001
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
132873
132946
+
Ala
GGC
[ENA]
¢þ
>WENV181032290
ODXM01000002
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
145041
145124
+
Leu
CAG
[ENA]
¢þ
>WENV181032291
ODXM01000002
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
159418
159494
+
Pro
CGG
[ENA]
¢þ
>WENV181032306
ODXM01000005
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
171556
171483
-
Val
CAC
[ENA]
¢þ
>WENV181032303
ODXM01000005
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
171935
172008
+
Gly
GCC
[ENA]
¢þ
>WENV181032304
ODXM01000005
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
172036
172107
+
Cys
GCA
[ENA]
¢þ
>WENV181032305
ODXM01000005
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
172108
172180
+
Val
GAC
[ENA]
¢þ
>WENV181032301
ODXM01000004
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
178283
178368
+
Ser
GGA
[ENA]
¢þ
>WENV181032295
ODXM01000002
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
187337
187250
-
Ser
CGA
[ENA]
¢þ
>WENV181032294
ODXM01000002
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
195591
195518
-
Arg
ACG
[ENA]
¢þ
>WENV181032293
ODXM01000002
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
195911
195821
-
Ser
GCT
[ENA]
¢þ
>WENV181032292
ODXM01000002
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
203242
203157
-
Ser
TGA
[ENA]
¢þ
>WENV181032299
ODXM01000003
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
226055
225968
-
Leu
GAG
[ENA]
¢þ
>WENV181032286
ODXM01000001
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
241885
241958
+
Asn
GTT
[ENA]
¢þ
>WENV181032287
ODXM01000001
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
254388
254462
+
Ile2
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK