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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[ODYF] human metagenome; G_DNA_Posterior fornix
HIT:
71 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181052400
ODYF01000064
[ODYF] human metagenome; G_DNA_Posterior fornix
60
134
+
Val
TAC
[ENA]
¢þ
>WENV181052451
ODYF01000620
[ODYF] human metagenome; G_DNA_Posterior fornix
66
140
+
Asn
GTT
[ENA]
¢þ
>WENV181052443
ODYF01000267
[ODYF] human metagenome; G_DNA_Posterior fornix
86
12
-
Thr
AGT
[ENA]
¢þ
>WENV181052434
ODYF01000102
[ODYF] human metagenome; G_DNA_Posterior fornix
106
32
-
Lys
CTT
[ENA]
¢þ
>WENV181052457
ODYF01000946
[ODYF] human metagenome; G_DNA_Posterior fornix
106
33
-
Gln
TTG
[ENA]
¢þ
>WENV181052446
ODYF01000532
[ODYF] human metagenome; G_DNA_Posterior fornix
106
180
+
Gly
GCC
[ENA]
¢þ
>WENV181052448
ODYF01000561
[ODYF] human metagenome; G_DNA_Posterior fornix
133
207
+
Gly
GCC
[ENA]
¢þ
>WENV181052401
ODYF01000064
[ODYF] human metagenome; G_DNA_Posterior fornix
138
210
+
Lys
TTT
[ENA]
¢þ
>WENV181052454
ODYF01000750
[ODYF] human metagenome; G_DNA_Posterior fornix
148
74
-
Ala
TGC
[ENA]
¢þ
>WENV181052456
ODYF01000776
[ODYF] human metagenome; G_DNA_Posterior fornix
203
111
-
Ser
GGA
[ENA]
¢þ
>WENV181052402
ODYF01000064
[ODYF] human metagenome; G_DNA_Posterior fornix
223
306
+
Leu
TAG
[ENA]
¢þ
>WENV181052449
ODYF01000561
[ODYF] human metagenome; G_DNA_Posterior fornix
244
319
+
Pro
CGG
[ENA]
¢þ
>WENV181052453
ODYF01000750
[ODYF] human metagenome; G_DNA_Posterior fornix
278
204
-
Ile
GAT
[ENA]
¢þ
>WENV181052455
ODYF01000776
[ODYF] human metagenome; G_DNA_Posterior fornix
286
212
-
Asn
GTT
[ENA]
¢þ
>WENV181052447
ODYF01000532
[ODYF] human metagenome; G_DNA_Posterior fornix
292
366
+
Gly
GCC
[ENA]
¢þ
>WENV181052452
ODYF01000688
[ODYF] human metagenome; G_DNA_Posterior fornix
322
248
-
Asn
GTT
[ENA]
¢þ
>WENV181052403
ODYF01000064
[ODYF] human metagenome; G_DNA_Posterior fornix
329
403
+
Thr
TGT
[ENA]
¢þ
>WENV181052435
ODYF01000152
[ODYF] human metagenome; G_DNA_Posterior fornix
395
469
+
Lys
CTT
[ENA]
¢þ
>WENV181052450
ODYF01000570
[ODYF] human metagenome; G_DNA_Posterior fornix
403
329
-
Asn
GTT
[ENA]
¢þ
>WENV181052404
ODYF01000064
[ODYF] human metagenome; G_DNA_Posterior fornix
413
484
+
Gly
GCC
[ENA]
¢þ
>WENV181052405
ODYF01000064
[ODYF] human metagenome; G_DNA_Posterior fornix
496
581
+
Leu
TAA
[ENA]
¢þ
>WENV181052406
ODYF01000064
[ODYF] human metagenome; G_DNA_Posterior fornix
590
664
+
Arg
ACG
[ENA]
¢þ
>WENV181052407
ODYF01000064
[ODYF] human metagenome; G_DNA_Posterior fornix
672
745
+
Pro
TGG
[ENA]
¢þ
>WENV181052408
ODYF01000064
[ODYF] human metagenome; G_DNA_Posterior fornix
775
850
+
Met
CAT
[ENA]
¢þ
>WENV181052409
ODYF01000064
[ODYF] human metagenome; G_DNA_Posterior fornix
862
937
+
Ile2
CAT
[ENA]
¢þ
>WENV181052410
ODYF01000064
[ODYF] human metagenome; G_DNA_Posterior fornix
959
1034
+
fMet
CAT
[ENA]
¢þ
>WENV181052411
ODYF01000064
[ODYF] human metagenome; G_DNA_Posterior fornix
1036
1111
+
Asp
GTC
[ENA]
¢þ
>WENV181052412
ODYF01000064
[ODYF] human metagenome; G_DNA_Posterior fornix
1116
1190
+
Phe
GAA
[ENA]
¢þ
>WENV181052445
ODYF01000350
[ODYF] human metagenome; G_DNA_Posterior fornix
1179
1106
-
Asn
GTT
[ENA]
¢þ
>WENV181052437
ODYF01000153
[ODYF] human metagenome; G_DNA_Posterior fornix
1251
1178
-
Pro
TGG
[ENA]
¢þ
>WENV181052413
ODYF01000064
[ODYF] human metagenome; G_DNA_Posterior fornix
1284
1360
+
Ile
GAT
[ENA]
¢þ
>WENV181052436
ODYF01000153
[ODYF] human metagenome; G_DNA_Posterior fornix
1333
1259
-
Arg
ACG
[ENA]
¢þ
>WENV181052414
ODYF01000064
[ODYF] human metagenome; G_DNA_Posterior fornix
1362
1452
+
Ser
GCT
[ENA]
¢þ
>WENV181052442
ODYF01000248
[ODYF] human metagenome; G_DNA_Posterior fornix
1566
1492
-
Val
TAC
[ENA]
¢þ
>WENV181052438
ODYF01000165
[ODYF] human metagenome; G_DNA_Posterior fornix
1616
1546
-
Gly
CCC
[ENA]
¢þ
>WENV181052441
ODYF01000248
[ODYF] human metagenome; G_DNA_Posterior fornix
1642
1570
-
Glu
TTC
[ENA]
¢þ
>WENV181052444
ODYF01000289
[ODYF] human metagenome; G_DNA_Posterior fornix
2029
1957
-
Thr
CGT
[ENA]
¢þ
>WENV181052415
ODYF01000064
[ODYF] human metagenome; G_DNA_Posterior fornix
2206
2279
+
Glu
TTC
[ENA]
¢þ
>WENV181052426
ODYF01000078
[ODYF] human metagenome; G_DNA_Posterior fornix
2252
2180
-
Trp
CCA
[ENA]
¢þ
>WENV181052433
ODYF01000101
[ODYF] human metagenome; G_DNA_Posterior fornix
2300
2214
-
Leu
CAG
[ENA]
¢þ
>WENV181052416
ODYF01000064
[ODYF] human metagenome; G_DNA_Posterior fornix
2312
2398
+
Ser
TGA
[ENA]
¢þ
>WENV181052417
ODYF01000064
[ODYF] human metagenome; G_DNA_Posterior fornix
2409
2484
+
fMet
CAT
[ENA]
¢þ
>WENV181052418
ODYF01000064
[ODYF] human metagenome; G_DNA_Posterior fornix
2486
2561
+
Asp
GTC
[ENA]
¢þ
>WENV181052419
ODYF01000064
[ODYF] human metagenome; G_DNA_Posterior fornix
2566
2641
+
Phe
GAA
[ENA]
¢þ
>WENV181052420
ODYF01000064
[ODYF] human metagenome; G_DNA_Posterior fornix
2645
2728
+
Tyr
GTA
[ENA]
¢þ
>WENV181052391
ODYF01000012
[ODYF] human metagenome; G_DNA_Posterior fornix
2699
2772
+
Sup
TCA
[ENA]
¢þ
>WENV181052421
ODYF01000064
[ODYF] human metagenome; G_DNA_Posterior fornix
2731
2803
+
Trp
CCA
[ENA]
¢þ
>WENV181052422
ODYF01000064
[ODYF] human metagenome; G_DNA_Posterior fornix
2815
2888
+
His
GTG
[ENA]
¢þ
>WENV181052440
ODYF01000181
[ODYF] human metagenome; G_DNA_Posterior fornix
2866
2782
-
Tyr
GTA
[ENA]
¢þ
>WENV181052423
ODYF01000064
[ODYF] human metagenome; G_DNA_Posterior fornix
2894
2967
+
Gln
TTG
[ENA]
¢þ
>WENV181052424
ODYF01000064
[ODYF] human metagenome; G_DNA_Posterior fornix
2990
3060
+
Cys
GCA
[ENA]
¢þ
>WENV181052425
ODYF01000064
[ODYF] human metagenome; G_DNA_Posterior fornix
3101
3187
+
Leu
CAA
[ENA]
¢þ
>WENV181052439
ODYF01000181
[ODYF] human metagenome; G_DNA_Posterior fornix
3324
3250
-
Asp
GTC
[ENA]
¢þ
>WENV181052427
ODYF01000087
[ODYF] human metagenome; G_DNA_Posterior fornix
3590
3676
+
Ser
TGA
[ENA]
¢þ
>WENV181052428
ODYF01000087
[ODYF] human metagenome; G_DNA_Posterior fornix
3687
3762
+
fMet
CAT
[ENA]
¢þ
>WENV181052429
ODYF01000087
[ODYF] human metagenome; G_DNA_Posterior fornix
3764
3839
+
Asp
GTC
[ENA]
¢þ
>WENV181052430
ODYF01000087
[ODYF] human metagenome; G_DNA_Posterior fornix
3845
3920
+
His
GTG
[ENA]
¢þ
>WENV181052431
ODYF01000087
[ODYF] human metagenome; G_DNA_Posterior fornix
3924
3998
+
Val
TAC
[ENA]
¢þ
>WENV181052432
ODYF01000091
[ODYF] human metagenome; G_DNA_Posterior fornix
4719
4646
-
Arg
CCG
[ENA]
¢þ
>WENV181052399
ODYF01000061
[ODYF] human metagenome; G_DNA_Posterior fornix
6633
6558
-
Arg
TCT
[ENA]
¢þ
>WENV181052393
ODYF01000022
[ODYF] human metagenome; G_DNA_Posterior fornix
6948
7033
+
Leu
AAG
[ENA]
¢þ
>WENV181052394
ODYF01000043
[ODYF] human metagenome; G_DNA_Posterior fornix
8019
8107
+
Ser
CGA
[ENA]
¢þ
>WENV181052398
ODYF01000060
[ODYF] human metagenome; G_DNA_Posterior fornix
9201
9127
-
Arg
CCT
[ENA]
¢þ
>WENV181052397
ODYF01000056
[ODYF] human metagenome; G_DNA_Posterior fornix
9478
9405
-
Gln
TTG
[ENA]
¢þ
>WENV181052396
ODYF01000056
[ODYF] human metagenome; G_DNA_Posterior fornix
9593
9512
-
Tyr
GTA
[ENA]
¢þ
>WENV181052392
ODYF01000017
[ODYF] human metagenome; G_DNA_Posterior fornix
13217
13143
-
Asn
GTT
[ENA]
¢þ
>WENV181052395
ODYF01000054
[ODYF] human metagenome; G_DNA_Posterior fornix
13277
13205
-
Thr
GGT
[ENA]
¢þ
>WENV181052389
ODYF01000005
[ODYF] human metagenome; G_DNA_Posterior fornix
18408
18336
-
Trp
CCA
[ENA]
¢þ
>WENV181052388
ODYF01000004
[ODYF] human metagenome; G_DNA_Posterior fornix
26029
25957
-
Gln
CTG
[ENA]
¢þ
>WENV181052387
ODYF01000004
[ODYF] human metagenome; G_DNA_Posterior fornix
26107
26034
-
Glu
CTC
[ENA]
¢þ
>WENV181052390
ODYF01000011
[ODYF] human metagenome; G_DNA_Posterior fornix
30640
30566
-
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK