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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[ODYH] human metagenome; G_DNA_Buccal mucosa
HIT:
54 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181053004
ODYH01005437
[ODYH] human metagenome; G_DNA_Buccal mucosa
19
90
+
Arg
TCT
[ENA]
¢þ
>WENV181052987
ODYH01001106
[ODYH] human metagenome; G_DNA_Buccal mucosa
32
104
+
Lys
TTT
[ENA]
¢þ
>WENV181052997
ODYH01004598
[ODYH] human metagenome; G_DNA_Buccal mucosa
46
126
+
Tyr
GTA
[ENA]
¢þ
>WENV181052983
ODYH01000918
[ODYH] human metagenome; G_DNA_Buccal mucosa
59
131
+
Val
TAC
[ENA]
¢þ
>WENV181052999
ODYH01004626
[ODYH] human metagenome; G_DNA_Buccal mucosa
60
133
+
Glu
CTC
[ENA]
¢þ
>WENV181053005
ODYH01005455
[ODYH] human metagenome; G_DNA_Buccal mucosa
73
158
+
Leu
AAG
[ENA]
¢þ
>WENV181053015
ODYH01007510
[ODYH] human metagenome; G_DNA_Buccal mucosa
83
154
+
Val
TAC
[ENA]
¢þ
>WENV181052992
ODYH01001679
[ODYH] human metagenome; G_DNA_Buccal mucosa
91
16
-
Gly
GCC
[ENA]
¢þ
>WENV181053013
ODYH01006888
[ODYH] human metagenome; G_DNA_Buccal mucosa
96
15
-
Leu
CAA
[ENA]
¢þ
>WENV181053011
ODYH01006263
[ODYH] human metagenome; G_DNA_Buccal mucosa
100
25
-
Ile2
CAT
[ENA]
¢þ
>WENV181052994
ODYH01002754
[ODYH] human metagenome; G_DNA_Buccal mucosa
104
28
-
Met
CAT
[ENA]
¢þ
>WENV181053021
ODYH01010529
[ODYH] human metagenome; G_DNA_Buccal mucosa
105
180
+
Val
TAC
[ENA]
¢þ
>WENV181052995
ODYH01002950
[ODYH] human metagenome; G_DNA_Buccal mucosa
107
181
+
Gln
TTG
[ENA]
¢þ
>WENV181052988
ODYH01001106
[ODYH] human metagenome; G_DNA_Buccal mucosa
109
192
+
Leu
TAG
[ENA]
¢þ
>WENV181053006
ODYH01005850
[ODYH] human metagenome; G_DNA_Buccal mucosa
111
38
-
Gly
CCC
[ENA]
¢þ
>WENV181053008
ODYH01005973
[ODYH] human metagenome; G_DNA_Buccal mucosa
114
41
-
Pro
TGG
[ENA]
¢þ
>WENV181053012
ODYH01006358
[ODYH] human metagenome; G_DNA_Buccal mucosa
116
191
+
Glu
TTC
[ENA]
¢þ
>WENV181053000
ODYH01005153
[ODYH] human metagenome; G_DNA_Buccal mucosa
117
41
-
Asp
GTC
[ENA]
¢þ
>WENV181052980
ODYH01000649
[ODYH] human metagenome; G_DNA_Buccal mucosa
123
47
-
Arg
ACG
[ENA]
¢þ
>WENV181053019
ODYH01008904
[ODYH] human metagenome; G_DNA_Buccal mucosa
130
205
+
Val
TAC
[ENA]
¢þ
>WENV181053001
ODYH01005229
[ODYH] human metagenome; G_DNA_Buccal mucosa
135
59
-
Arg
CCG
[ENA]
¢þ
>WENV181053003
ODYH01005243
[ODYH] human metagenome; G_DNA_Buccal mucosa
135
60
-
Lys
TTT
[ENA]
¢þ
>WENV181052998
ODYH01004598
[ODYH] human metagenome; G_DNA_Buccal mucosa
136
207
+
Gln
TTG
[ENA]
¢þ
>WENV181052984
ODYH01000918
[ODYH] human metagenome; G_DNA_Buccal mucosa
136
208
+
Gly
TCC
[ENA]
¢þ
>WENV181053016
ODYH01007814
[ODYH] human metagenome; G_DNA_Buccal mucosa
145
220
+
Asn
GTT
[ENA]
¢þ
>WENV181053014
ODYH01007426
[ODYH] human metagenome; G_DNA_Buccal mucosa
151
79
-
Thr
GGT
[ENA]
¢þ
>WENV181053020
ODYH01009852
[ODYH] human metagenome; G_DNA_Buccal mucosa
155
82
-
Cys
GCA
[ENA]
¢þ
>WENV181053009
ODYH01006149
[ODYH] human metagenome; G_DNA_Buccal mucosa
168
92
-
fMet
CAT
[ENA]
¢þ
>WENV181053017
ODYH01007880
[ODYH] human metagenome; G_DNA_Buccal mucosa
177
104
-
Trp
CCA
[ENA]
¢þ
>WENV181053010
ODYH01006263
[ODYH] human metagenome; G_DNA_Buccal mucosa
187
112
-
Met
CAT
[ENA]
¢þ
>WENV181053018
ODYH01008422
[ODYH] human metagenome; G_DNA_Buccal mucosa
193
120
-
Phe
GAA
[ENA]
¢þ
>WENV181053007
ODYH01005973
[ODYH] human metagenome; G_DNA_Buccal mucosa
203
130
-
Arg
ACG
[ENA]
¢þ
>WENV181052989
ODYH01001106
[ODYH] human metagenome; G_DNA_Buccal mucosa
210
282
+
Thr
TGT
[ENA]
¢þ
>WENV181052996
ODYH01003467
[ODYH] human metagenome; G_DNA_Buccal mucosa
227
303
+
Pro
TGG
[ENA]
¢þ
>WENV181052976
ODYH01000124
[ODYH] human metagenome; G_DNA_Buccal mucosa
236
161
-
Asn
GTT
[ENA]
¢þ
>WENV181053002
ODYH01005243
[ODYH] human metagenome; G_DNA_Buccal mucosa
240
154
-
Leu
TAA
[ENA]
¢þ
>WENV181052985
ODYH01000918
[ODYH] human metagenome; G_DNA_Buccal mucosa
240
315
+
Ile
GAT
[ENA]
¢þ
>WENV181052979
ODYH01000649
[ODYH] human metagenome; G_DNA_Buccal mucosa
253
177
-
Arg
ACG
[ENA]
¢þ
>WENV181052993
ODYH01002301
[ODYH] human metagenome; G_DNA_Buccal mucosa
265
176
-
Ser
GGA
[ENA]
¢þ
>WENV181052990
ODYH01001106
[ODYH] human metagenome; G_DNA_Buccal mucosa
305
376
+
Gly
GCC
[ENA]
¢þ
>WENV181052986
ODYH01000918
[ODYH] human metagenome; G_DNA_Buccal mucosa
320
409
+
Ser
GCT
[ENA]
¢þ
>WENV181052978
ODYH01000649
[ODYH] human metagenome; G_DNA_Buccal mucosa
370
277
-
Ser
GCT
[ENA]
¢þ
>WENV181052991
ODYH01001106
[ODYH] human metagenome; G_DNA_Buccal mucosa
384
469
+
Leu
TAA
[ENA]
¢þ
>WENV181052977
ODYH01000206
[ODYH] human metagenome; G_DNA_Buccal mucosa
387
460
+
Lys
CTT
[ENA]
¢þ
>WENV181052981
ODYH01000703
[ODYH] human metagenome; G_DNA_Buccal mucosa
441
368
-
Arg
TCT
[ENA]
¢þ
>WENV181052982
ODYH01000726
[ODYH] human metagenome; G_DNA_Buccal mucosa
506
433
-
Asn
GTT
[ENA]
¢þ
>WENV181052970
ODYH01000002
[ODYH] human metagenome; G_DNA_Buccal mucosa
534
608
+
Ala
TGC
[ENA]
¢þ
>WENV181052974
ODYH01000006
[ODYH] human metagenome; G_DNA_Buccal mucosa
1351
1276
-
Thr
GGT
[ENA]
¢þ
>WENV181052973
ODYH01000006
[ODYH] human metagenome; G_DNA_Buccal mucosa
1429
1355
-
Gly
TCC
[ENA]
¢þ
>WENV181052975
ODYH01000014
[ODYH] human metagenome; G_DNA_Buccal mucosa
1435
1362
-
Glu
TTC
[ENA]
¢þ
>WENV181052972
ODYH01000006
[ODYH] human metagenome; G_DNA_Buccal mucosa
1555
1471
-
Tyr
GTA
[ENA]
¢þ
>WENV181052971
ODYH01000006
[ODYH] human metagenome; G_DNA_Buccal mucosa
1661
1586
-
Thr
TGT
[ENA]
¢þ
>WENV181052968
ODYH01000001
[ODYH] human metagenome; G_DNA_Buccal mucosa
2264
2340
+
Ile
GAT
[ENA]
¢þ
>WENV181052969
ODYH01000001
[ODYH] human metagenome; G_DNA_Buccal mucosa
2394
2469
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK