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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OEAH] human gut metagenome; human gut
HIT:
68 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181071197
OEAH01026020
[OEAH] human gut metagenome; human gut
26
101
+
Val
TAC
[ENA]
¢þ
>WENV181071174
OEAH01011685
[OEAH] human gut metagenome; human gut
30
105
+
Val
GAC
[ENA]
¢þ
>WENV181071192
OEAH01019420
[OEAH] human gut metagenome; human gut
32
107
+
Ala
TGC
[ENA]
¢þ
>WENV181071189
OEAH01017319
[OEAH] human gut metagenome; human gut
35
110
+
Gly
CCC
[ENA]
¢þ
>WENV181071171
OEAH01011286
[OEAH] human gut metagenome; human gut
38
113
+
Thr
CGT
[ENA]
¢þ
>WENV181071185
OEAH01015769
[OEAH] human gut metagenome; human gut
39
112
+
Gln
CTG
[ENA]
¢þ
>WENV181071146
OEAH01004373
[OEAH] human gut metagenome; human gut
41
122
+
Tyr
GTA
[ENA]
¢þ
>WENV181071188
OEAH01016557
[OEAH] human gut metagenome; human gut
48
122
+
Phe
GAA
[ENA]
¢þ
>WENV181071168
OEAH01010845
[OEAH] human gut metagenome; human gut
49
123
+
Cys
GCA
[ENA]
¢þ
>WENV181071142
OEAH01003987
[OEAH] human gut metagenome; human gut
51
124
+
Asn
GTT
[ENA]
¢þ
>WENV181071140
OEAH01003631
[OEAH] human gut metagenome; human gut
53
126
+
Thr
TGT
[ENA]
¢þ
>WENV181071173
OEAH01011484
[OEAH] human gut metagenome; human gut
56
138
+
Leu
CAA
[ENA]
¢þ
>WENV181071194
OEAH01020556
[OEAH] human gut metagenome; human gut
59
132
+
Phe
GAA
[ENA]
¢þ
>WENV181071182
OEAH01014954
[OEAH] human gut metagenome; human gut
64
136
+
Pro
TGG
[ENA]
¢þ
>WENV181071149
OEAH01005011
[OEAH] human gut metagenome; human gut
64
137
+
Ala
TGC
[ENA]
¢þ
>WENV181071162
OEAH01009156
[OEAH] human gut metagenome; human gut
71
145
+
Thr
TGT
[ENA]
¢þ
>WENV181071195
OEAH01020836
[OEAH] human gut metagenome; human gut
79
154
+
Val
TAC
[ENA]
¢þ
>WENV181071177
OEAH01012620
[OEAH] human gut metagenome; human gut
83
12
-
Gly
TCC
[ENA]
¢þ
>WENV181071169
OEAH01010920
[OEAH] human gut metagenome; human gut
90
165
+
Pro
GGG
[ENA]
¢þ
>WENV181071193
OEAH01020461
[OEAH] human gut metagenome; human gut
91
178
+
Leu
TAA
[ENA]
¢þ
>WENV181071154
OEAH01006154
[OEAH] human gut metagenome; human gut
100
29
-
Asn
GTT
[ENA]
¢þ
>WENV181071187
OEAH01016332
[OEAH] human gut metagenome; human gut
102
175
+
Lys
CTT
[ENA]
¢þ
>WENV181071158
OEAH01007577
[OEAH] human gut metagenome; human gut
111
32
-
Leu
TAG
[ENA]
¢þ
>WENV181071167
OEAH01010489
[OEAH] human gut metagenome; human gut
117
192
+
Gly
GCC
[ENA]
¢þ
>WENV181071161
OEAH01009134
[OEAH] human gut metagenome; human gut
122
51
-
Cys
GCA
[ENA]
¢þ
>WENV181071165
OEAH01009953
[OEAH] human gut metagenome; human gut
124
50
-
Thr
TGT
[ENA]
¢þ
>WENV181071133
OEAH01000258
[OEAH] human gut metagenome; human gut
126
52
-
Ala
TGC
[ENA]
¢þ
>WENV181071152
OEAH01005499
[OEAH] human gut metagenome; human gut
127
51
-
Ile
GAT
[ENA]
¢þ
>WENV181071186
OEAH01015824
[OEAH] human gut metagenome; human gut
133
47
-
Ser
TGA
[ENA]
¢þ
>WENV181071143
OEAH01003987
[OEAH] human gut metagenome; human gut
133
204
+
Glu
TTC
[ENA]
¢þ
>WENV181071170
OEAH01011253
[OEAH] human gut metagenome; human gut
133
222
+
Ser
GCT
[ENA]
¢þ
>WENV181071157
OEAH01006585
[OEAH] human gut metagenome; human gut
140
64
-
Asp
GTC
[ENA]
¢þ
>WENV181071159
OEAH01008767
[OEAH] human gut metagenome; human gut
140
214
+
Glu
TTC
[ENA]
¢þ
>WENV181071139
OEAH01003407
[OEAH] human gut metagenome; human gut
141
67
-
His
GTG
[ENA]
¢þ
>WENV181071178
OEAH01013335
[OEAH] human gut metagenome; human gut
145
218
+
Asn
GTT
[ENA]
¢þ
>WENV181071190
OEAH01018285
[OEAH] human gut metagenome; human gut
148
73
-
Ile2
CAT
[ENA]
¢þ
>WENV181071172
OEAH01011409
[OEAH] human gut metagenome; human gut
150
77
-
Cys
GCA
[ENA]
¢þ
>WENV181071191
OEAH01019182
[OEAH] human gut metagenome; human gut
154
81
-
Pro
CGG
[ENA]
¢þ
>WENV181071184
OEAH01015570
[OEAH] human gut metagenome; human gut
157
71
-
Leu
CAG
[ENA]
¢þ
>WENV181071163
OEAH01009588
[OEAH] human gut metagenome; human gut
158
82
-
Ile
GAT
[ENA]
¢þ
>WENV181071150
OEAH01005146
[OEAH] human gut metagenome; human gut
161
89
-
Thr
CGT
[ENA]
¢þ
>WENV181071155
OEAH01006182
[OEAH] human gut metagenome; human gut
164
89
-
Ala
TGC
[ENA]
¢þ
>WENV181071179
OEAH01013397
[OEAH] human gut metagenome; human gut
169
97
-
Thr
TGT
[ENA]
¢þ
>WENV181071153
OEAH01005895
[OEAH] human gut metagenome; human gut
175
249
+
Ile2
CAT
[ENA]
¢þ
>WENV181071183
OEAH01015014
[OEAH] human gut metagenome; human gut
176
103
-
Gly
CCC
[ENA]
¢þ
>WENV181071147
OEAH01004373
[OEAH] human gut metagenome; human gut
179
253
+
fMet
CAT
[ENA]
¢þ
>WENV181071181
OEAH01014835
[OEAH] human gut metagenome; human gut
181
98
-
Leu
CAG
[ENA]
¢þ
>WENV181071164
OEAH01009878
[OEAH] human gut metagenome; human gut
183
108
-
Gly
GCC
[ENA]
¢þ
>WENV181071176
OEAH01012620
[OEAH] human gut metagenome; human gut
184
100
-
Tyr
GTA
[ENA]
¢þ
>WENV181071196
OEAH01022185
[OEAH] human gut metagenome; human gut
187
106
-
Leu
TAG
[ENA]
¢þ
>WENV181071180
OEAH01014350
[OEAH] human gut metagenome; human gut
198
115
-
Leu
TAG
[ENA]
¢þ
>WENV181071151
OEAH01005499
[OEAH] human gut metagenome; human gut
206
131
-
Ala
TGC
[ENA]
¢þ
>WENV181071166
OEAH01010360
[OEAH] human gut metagenome; human gut
211
121
-
Ser
GGA
[ENA]
¢þ
>WENV181071141
OEAH01003764
[OEAH] human gut metagenome; human gut
211
294
+
Leu
CAA
[ENA]
¢þ
>WENV181071160
OEAH01009134
[OEAH] human gut metagenome; human gut
212
141
-
Asn
GTT
[ENA]
¢þ
>WENV181071144
OEAH01003987
[OEAH] human gut metagenome; human gut
216
287
+
Cys
GCA
[ENA]
¢þ
>WENV181071156
OEAH01006585
[OEAH] human gut metagenome; human gut
219
144
-
Val
TAC
[ENA]
¢þ
>WENV181071175
OEAH01011764
[OEAH] human gut metagenome; human gut
220
144
-
Arg
ACG
[ENA]
¢þ
>WENV181071134
OEAH01000526
[OEAH] human gut metagenome; human gut
229
304
+
Lys
CTT
[ENA]
¢þ
>WENV181071145
OEAH01004008
[OEAH] human gut metagenome; human gut
234
159
-
Lys
CTT
[ENA]
¢þ
>WENV181071132
OEAH01000258
[OEAH] human gut metagenome; human gut
236
161
-
Ile
GAT
[ENA]
¢þ
>WENV181071148
OEAH01004471
[OEAH] human gut metagenome; human gut
260
185
-
Arg
CCT
[ENA]
¢þ
>WENV181071138
OEAH01003407
[OEAH] human gut metagenome; human gut
260
185
-
Arg
TCT
[ENA]
¢þ
>WENV181071137
OEAH01002513
[OEAH] human gut metagenome; human gut
301
217
-
Tyr
GTA
[ENA]
¢þ
>WENV181071135
OEAH01000526
[OEAH] human gut metagenome; human gut
360
434
+
Glu
CTC
[ENA]
¢þ
>WENV181071136
OEAH01000613
[OEAH] human gut metagenome; human gut
437
511
+
Pro
CGG
[ENA]
¢þ
>WENV181071130
OEAH01000022
[OEAH] human gut metagenome; human gut
1842
1917
+
Ala
TGC
[ENA]
¢þ
>WENV181071131
OEAH01000022
[OEAH] human gut metagenome; human gut
1921
1997
+
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK