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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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HOW TO USE
tRNA gene List
[OEAM] human metagenome; G_DNA_Supragingival plaque
HIT:
55 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181071539
OEAM01002309
[OEAM] human metagenome; G_DNA_Supragingival plaque
4
77
+
Arg
CCT
[ENA]
¢þ
>WENV181071515
OEAM01000005
[OEAM] human metagenome; G_DNA_Supragingival plaque
28
103
+
Ala
TGC
[ENA]
¢þ
>WENV181071568
OEAM01011119
[OEAM] human metagenome; G_DNA_Supragingival plaque
32
104
+
Gln
TTG
[ENA]
¢þ
>WENV181071563
OEAM01008991
[OEAM] human metagenome; G_DNA_Supragingival plaque
49
121
+
Thr
TGT
[ENA]
¢þ
>WENV181071565
OEAM01009186
[OEAM] human metagenome; G_DNA_Supragingival plaque
68
142
+
Gln
TTG
[ENA]
¢þ
>WENV181071562
OEAM01008710
[OEAM] human metagenome; G_DNA_Supragingival plaque
79
5
-
Ala
TGC
[ENA]
¢þ
>WENV181071527
OEAM01001270
[OEAM] human metagenome; G_DNA_Supragingival plaque
84
8
-
Ile
GAT
[ENA]
¢þ
>WENV181071556
OEAM01007354
[OEAM] human metagenome; G_DNA_Supragingival plaque
84
8
-
Met
CAT
[ENA]
¢þ
>WENV181071538
OEAM01002158
[OEAM] human metagenome; G_DNA_Supragingival plaque
84
172
+
Ser
TGA
[ENA]
¢þ
>WENV181071569
OEAM01011245
[OEAM] human metagenome; G_DNA_Supragingival plaque
90
14
-
Pro
CGG
[ENA]
¢þ
>WENV181071533
OEAM01001826
[OEAM] human metagenome; G_DNA_Supragingival plaque
94
170
+
Pro
CGG
[ENA]
¢þ
>WENV181071537
OEAM01002092
[OEAM] human metagenome; G_DNA_Supragingival plaque
96
23
-
Asn
GTT
[ENA]
¢þ
>WENV181071567
OEAM01011103
[OEAM] human metagenome; G_DNA_Supragingival plaque
98
173
+
Val
TAC
[ENA]
¢þ
>WENV181071555
OEAM01006939
[OEAM] human metagenome; G_DNA_Supragingival plaque
102
190
+
Ser
CGA
[ENA]
¢þ
>WENV181071558
OEAM01007670
[OEAM] human metagenome; G_DNA_Supragingival plaque
102
191
+
Ser
GCT
[ENA]
¢þ
>WENV181071553
OEAM01006579
[OEAM] human metagenome; G_DNA_Supragingival plaque
109
184
+
Thr
TGT
[ENA]
¢þ
>WENV181071542
OEAM01002479
[OEAM] human metagenome; G_DNA_Supragingival plaque
114
41
-
Glu
TTC
[ENA]
¢þ
>WENV181071557
OEAM01007470
[OEAM] human metagenome; G_DNA_Supragingival plaque
117
192
+
Pro
TGG
[ENA]
¢þ
>WENV181071551
OEAM01005890
[OEAM] human metagenome; G_DNA_Supragingival plaque
125
51
-
Pro
TGG
[ENA]
¢þ
>WENV181071548
OEAM01005191
[OEAM] human metagenome; G_DNA_Supragingival plaque
125
52
-
Glu
CTC
[ENA]
¢þ
>WENV181071559
OEAM01007800
[OEAM] human metagenome; G_DNA_Supragingival plaque
125
52
-
Arg
TCT
[ENA]
¢þ
>WENV181071560
OEAM01008248
[OEAM] human metagenome; G_DNA_Supragingival plaque
125
201
+
Ala
CGC
[ENA]
¢þ
>WENV181071546
OEAM01004884
[OEAM] human metagenome; G_DNA_Supragingival plaque
130
205
+
Asp
GTC
[ENA]
¢þ
>WENV181071545
OEAM01004695
[OEAM] human metagenome; G_DNA_Supragingival plaque
139
63
-
Val
TAC
[ENA]
¢þ
>WENV181071564
OEAM01008991
[OEAM] human metagenome; G_DNA_Supragingival plaque
144
215
+
Gly
GCC
[ENA]
¢þ
>WENV181071552
OEAM01006208
[OEAM] human metagenome; G_DNA_Supragingival plaque
144
220
+
fMet
CAT
[ENA]
¢þ
>WENV181071566
OEAM01009186
[OEAM] human metagenome; G_DNA_Supragingival plaque
147
222
+
Lys
TTT
[ENA]
¢þ
>WENV181071532
OEAM01001544
[OEAM] human metagenome; G_DNA_Supragingival plaque
157
84
-
Glu
CTC
[ENA]
¢þ
>WENV181071522
OEAM01000269
[OEAM] human metagenome; G_DNA_Supragingival plaque
158
83
-
Ala
TGC
[ENA]
¢þ
>WENV181071554
OEAM01006935
[OEAM] human metagenome; G_DNA_Supragingival plaque
160
233
+
Trp
CCA
[ENA]
¢þ
>WENV181071561
OEAM01008710
[OEAM] human metagenome; G_DNA_Supragingival plaque
170
96
-
Ile
GAT
[ENA]
¢þ
>WENV181071549
OEAM01005308
[OEAM] human metagenome; G_DNA_Supragingival plaque
186
102
-
Leu
TAA
[ENA]
¢þ
>WENV181071525
OEAM01000875
[OEAM] human metagenome; G_DNA_Supragingival plaque
192
276
+
Leu
CAG
[ENA]
¢þ
>WENV181071541
OEAM01002479
[OEAM] human metagenome; G_DNA_Supragingival plaque
199
124
-
Ile
GAT
[ENA]
¢þ
>WENV181071534
OEAM01001948
[OEAM] human metagenome; G_DNA_Supragingival plaque
205
298
+
Ser
GCT
[ENA]
¢þ
>WENV181071543
OEAM01003160
[OEAM] human metagenome; G_DNA_Supragingival plaque
238
328
+
Leu
GAG
[ENA]
¢þ
>WENV181071547
OEAM01005093
[OEAM] human metagenome; G_DNA_Supragingival plaque
240
167
-
Ala
TGC
[ENA]
¢þ
>WENV181071550
OEAM01005890
[OEAM] human metagenome; G_DNA_Supragingival plaque
244
173
-
Gly
TCC
[ENA]
¢þ
>WENV181071531
OEAM01001544
[OEAM] human metagenome; G_DNA_Supragingival plaque
247
175
-
Gln
CTG
[ENA]
¢þ
>WENV181071523
OEAM01000437
[OEAM] human metagenome; G_DNA_Supragingival plaque
263
337
+
Asn
GTT
[ENA]
¢þ
>WENV181071544
OEAM01003711
[OEAM] human metagenome; G_DNA_Supragingival plaque
272
198
-
Ala
TGC
[ENA]
¢þ
>WENV181071536
OEAM01001979
[OEAM] human metagenome; G_DNA_Supragingival plaque
291
364
+
Trp
CCA
[ENA]
¢þ
>WENV181071529
OEAM01001398
[OEAM] human metagenome; G_DNA_Supragingival plaque
296
369
+
Ala
GGC
[ENA]
¢þ
>WENV181071540
OEAM01002479
[OEAM] human metagenome; G_DNA_Supragingival plaque
305
233
-
Gly
TCC
[ENA]
¢þ
>WENV181071535
OEAM01001948
[OEAM] human metagenome; G_DNA_Supragingival plaque
323
398
+
Arg
ACG
[ENA]
¢þ
>WENV181071530
OEAM01001452
[OEAM] human metagenome; G_DNA_Supragingival plaque
380
304
-
Pro
GGG
[ENA]
¢þ
>WENV181071516
OEAM01000117
[OEAM] human metagenome; G_DNA_Supragingival plaque
385
312
-
Thr
CGT
[ENA]
¢þ
>WENV181071528
OEAM01001308
[OEAM] human metagenome; G_DNA_Supragingival plaque
386
299
-
Ser
GGA
[ENA]
¢þ
>WENV181071521
OEAM01000269
[OEAM] human metagenome; G_DNA_Supragingival plaque
429
354
-
Ile
GAT
[ENA]
¢þ
>WENV181071520
OEAM01000191
[OEAM] human metagenome; G_DNA_Supragingival plaque
435
361
-
Met
CAT
[ENA]
¢þ
>WENV181071526
OEAM01000997
[OEAM] human metagenome; G_DNA_Supragingival plaque
460
385
-
His
GTG
[ENA]
¢þ
>WENV181071524
OEAM01000532
[OEAM] human metagenome; G_DNA_Supragingival plaque
515
441
-
Ile2
CAT
[ENA]
¢þ
>WENV181071519
OEAM01000191
[OEAM] human metagenome; G_DNA_Supragingival plaque
546
473
-
Thr
GGT
[ENA]
¢þ
>WENV181071517
OEAM01000182
[OEAM] human metagenome; G_DNA_Supragingival plaque
718
642
-
Leu
CAA
[ENA]
¢þ
>WENV181071518
OEAM01000191
[OEAM] human metagenome; G_DNA_Supragingival plaque
738
656
-
Tyr
GTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK