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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OEBD] human gut metagenome; human gut
HIT:
25 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181092341
OEBD01003629
[OEBD] human gut metagenome; human gut
13
88
+
Pro
TGG
[ENA]
¢þ
>WENV181092323
OEBD01000500
[OEBD] human gut metagenome; human gut
21
92
+
Cys
GCA
[ENA]
¢þ
>WENV181092340
OEBD01003285
[OEBD] human gut metagenome; human gut
30
104
+
Arg
TCT
[ENA]
¢þ
>WENV181092339
OEBD01003268
[OEBD] human gut metagenome; human gut
32
105
+
Arg
CCT
[ENA]
¢þ
>WENV181092342
OEBD01004250
[OEBD] human gut metagenome; human gut
63
137
+
Met
CAT
[ENA]
¢þ
>WENV181092334
OEBD01001476
[OEBD] human gut metagenome; human gut
66
142
+
Pro
GGG
[ENA]
¢þ
>WENV181092331
OEBD01000725
[OEBD] human gut metagenome; human gut
76
155
+
Leu
CAA
[ENA]
¢þ
>WENV181092343
OEBD01004338
[OEBD] human gut metagenome; human gut
77
153
+
Glu
CTC
[ENA]
¢þ
>WENV181092338
OEBD01002028
[OEBD] human gut metagenome; human gut
81
155
+
Gln
CTG
[ENA]
¢þ
>WENV181092329
OEBD01000699
[OEBD] human gut metagenome; human gut
88
160
+
Glu
TTC
[ENA]
¢þ
>WENV181092336
OEBD01001556
[OEBD] human gut metagenome; human gut
127
54
-
Glu
CTC
[ENA]
¢þ
>WENV181092324
OEBD01000500
[OEBD] human gut metagenome; human gut
132
204
+
Val
GAC
[ENA]
¢þ
>WENV181092328
OEBD01000691
[OEBD] human gut metagenome; human gut
152
240
+
Leu
GAG
[ENA]
¢þ
>WENV181092333
OEBD01001439
[OEBD] human gut metagenome; human gut
158
231
+
Arg
CCT
[ENA]
¢þ
>WENV181092335
OEBD01001497
[OEBD] human gut metagenome; human gut
174
247
+
Thr
CGT
[ENA]
¢þ
>WENV181092337
OEBD01001734
[OEBD] human gut metagenome; human gut
214
129
-
Leu
CAG
[ENA]
¢þ
>WENV181092330
OEBD01000719
[OEBD] human gut metagenome; human gut
226
300
+
Lys
CTT
[ENA]
¢þ
>WENV181092325
OEBD01000500
[OEBD] human gut metagenome; human gut
252
325
+
Val
CAC
[ENA]
¢þ
>WENV181092332
OEBD01001040
[OEBD] human gut metagenome; human gut
279
205
-
Leu
CAA
[ENA]
¢þ
>WENV181092320
OEBD01000101
[OEBD] human gut metagenome; human gut
315
240
-
Trp
CCA
[ENA]
¢þ
>WENV181092327
OEBD01000683
[OEBD] human gut metagenome; human gut
344
270
-
fMet
CAT
[ENA]
¢þ
>WENV181092326
OEBD01000500
[OEBD] human gut metagenome; human gut
356
431
+
Gly
GCC
[ENA]
¢þ
>WENV181092322
OEBD01000339
[OEBD] human gut metagenome; human gut
400
325
-
Arg
CCG
[ENA]
¢þ
>WENV181092321
OEBD01000302
[OEBD] human gut metagenome; human gut
505
431
-
Val
TAC
[ENA]
¢þ
>WENV181092319
OEBD01000071
[OEBD] human gut metagenome; human gut
788
714
-
Thr
TGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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