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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OEDA] human gut metagenome; human gut
HIT:
12 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181104169
OEDA01000170
[OEDA] human gut metagenome; human gut
30
105
+
Ala
TGC
[ENA]
¢þ
>WENV181104179
OEDA01002901
[OEDA] human gut metagenome; human gut
39
112
+
Thr
CGT
[ENA]
¢þ
>WENV181104178
OEDA01002891
[OEDA] human gut metagenome; human gut
66
139
+
Ala
TGC
[ENA]
¢þ
>WENV181104175
OEDA01001494
[OEDA] human gut metagenome; human gut
103
30
-
Gly
GCC
[ENA]
¢þ
>WENV181104173
OEDA01001025
[OEDA] human gut metagenome; human gut
105
180
+
Ala
GGC
[ENA]
¢þ
>WENV181104170
OEDA01000170
[OEDA] human gut metagenome; human gut
109
185
+
Ile
GAT
[ENA]
¢þ
>WENV181104171
OEDA01000201
[OEDA] human gut metagenome; human gut
121
45
-
Arg
TCT
[ENA]
¢þ
>WENV181104177
OEDA01002522
[OEDA] human gut metagenome; human gut
122
49
-
Gly
GCC
[ENA]
¢þ
>WENV181104176
OEDA01001623
[OEDA] human gut metagenome; human gut
137
211
+
Asn
GTT
[ENA]
¢þ
>WENV181104172
OEDA01000773
[OEDA] human gut metagenome; human gut
177
103
-
Thr
TGT
[ENA]
¢þ
>WENV181104174
OEDA01001494
[OEDA] human gut metagenome; human gut
209
136
-
Val
CAC
[ENA]
¢þ
>WENV181104168
OEDA01000011
[OEDA] human gut metagenome; human gut
1577
1651
+
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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